PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.G88UP | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 37328 Da PI: 8.4649 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.5 | 3.3e-33 | 81 | 221 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 lp+G++F+P+d+e++ e+L +kv+++ ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + + Araip.G88UP 81 LPAGVKFDPNDQEIL-EHLDAKVQSDVrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHtdqegsETR 174 799***********9.99******99856643322..22222333336**********.566677888******************744445555778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk++++ + g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Araip.G88UP 175 WHKTGKTRPISV-AGSVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 221 ***********9.9999**********6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-36 | 76 | 240 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.812 | 81 | 240 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-15 | 82 | 221 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MTWCNRSSVV EGGIEIINHP NLNIIAIPRN SNDNNNSVIS VNHANTPPKP TEIRAVTCPS 60 CGHHIQIQQD QGGGIQDLPG LPAGVKFDPN DQEILEHLDA KVQSDVRKLH PLIDEFIPTL 120 EGENGICYTH PEKLPGVSKD GQVRHFFHRP SKAYTTGTRK RRKVHTDQEG SETRWHKTGK 180 TRPISVAGSV KGFKKILVLY TNYGRQKKPE KTNWVMHQYH LGSNEEEKDG ELVVSKVFYQ 240 TQPRQCANKD PYDERLLMTS QINSVNDISI HALPKNNNNN NAGFVDYYNP GFMNMNYEQM 300 NETTSPQLIP NMVVQGDSSS FIRLPRLDRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00165 | DAP | Transfer from AT1G28470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.G88UP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193588.1 | 0.0 | NAC domain-containing protein 10-like | ||||
Refseq | XP_025638321.1 | 0.0 | NAC domain-containing protein 10 | ||||
Swissprot | F4HY61 | 1e-117 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | A0A444ZWJ1 | 0.0 | A0A444ZWJ1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G24320.1 | 1e-158 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 1e-105 | NAC domain containing protein 10 |