PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.F5JIT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WOX | ||||||||
Protein Properties | Length: 322aa MW: 36461.3 Da PI: 8.1324 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.1e-21 | 83 | 142 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql +Leel+++ +++psae+++++A++l +++ ++V++WFqN++a+e++ Araip.F5JIT 83 TRWSPTPIQLLVLEELYRQgTKTPSAEQIQQIASQLrrfgKIEGKNVFYWFQNHKARERQ 142 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 110 | 1.3e-35 | 81 | 144 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + tRW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Araip.F5JIT 81 QGTRWSPTPIQLLVLEELYRQGTKTPSAEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQKR 144 579***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-13 | 78 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.872 | 78 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-6 | 80 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.32E-5 | 83 | 138 | No hit | No description |
Pfam | PF00046 | 5.5E-19 | 83 | 142 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 84 | 142 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MSSHSFSNLF HSSTTTTTPN SSTTTLLDSI VATPKQQLTA CICTHCNHLL TFNPAGHGVE 60 QGTNSNNNNN NVQSHHHQLQ QGTRWSPTPI QLLVLEELYR QGTKTPSAEQ IQQIASQLRR 120 FGKIEGKNVF YWFQNHKARE RQKRRRREME ETTAAASAKG LKETGCEVKE TKKWASTSNC 180 NGGGGHAVQE SMTAVDISEK ESNGWNEFEE RVLRRNRSER QAKYFNIPSI NIAATASVAS 240 QITHNIQLLS THHHPQHHNY NKQDNTSSHP RTLELFPIHK NHDDDDDIIS FSDRKSNKLC 300 ANASMEEALS CDQFFEFLPL RN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.F5JIT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016195402.1 | 0.0 | WUSCHEL-related homeobox 1 | ||||
Refseq | XP_025646993.1 | 0.0 | WUSCHEL-related homeobox 1 | ||||
TrEMBL | A0A444ZJ51 | 0.0 | A0A444ZJ51_ARAHY; Uncharacterized protein | ||||
STRING | XP_007157754.1 | 3e-92 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15154 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 2e-26 | WUSCHEL related homeobox 1 |