PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.EY89K
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 366aa    MW: 39989.3 Da    PI: 8.2224
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.EY89KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.89.9e-1082106126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt++C  f+  GtC+ G++C+FaHg
  Araip.EY89K  82 YKTRICAKFRL-GTCRNGENCNFAHG 106
                  9**********.*************8 PP
2zf-CCCH27.36.2e-09143166225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  k++lC+ f+ + +C+yG+rC+F H
  Araip.EY89K 143 KMKLCKKFYNGEECPYGERCSFLH 166
                  789*******66************ PP
3zf-CCCH40.83.7e-13246272127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC  +  tG+C++G+ C+FaHg+
  Araip.EY89K 246 WKTKLCIKWETTGHCPFGGDCHFAHGQ 272
                  8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-1478114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-879112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.24481108IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-581107IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-782106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7141168IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025141168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-9143167IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6143166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-15243277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-10244276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267245273IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5245272IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10246272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNFPDNIQTF TMSPTRFAST DAIDVRLRQV PMNNESLDLH SHLDQTPLAK RPRTSMENLN  60
DSPRTMNTAN PAGNKGTSHI FYKTRICAKF RLGTCRNGEN CNFAHGADDV RQPPPNWQEI  120
VGLRGNDERS SGNWDDDHKI IHKMKLCKKF YNGEECPYGE RCSFLHEDPG KFREDSNSAR  180
YRDRESSVIS IGTTNGSPPK GYGGGDGGGS RCNSSEGCGN NRAVNNGNGG VAGLNVSRGS  240
SKGTYWKTKL CIKWETTGHC PFGGDCHFAH GQAELQAPGG RAEAEVVGAI SASTKSAVPN  300
LPNVVSSVHA NEVHPSNTAS VPPANEDGQG NKSLLKWKGF KKINRIYGDW LDDFPLVHNL  360
PSRVET
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.EY89K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179224.10.0zinc finger CCCH domain-containing protein 39
RefseqXP_025683784.10.0zinc finger CCCH domain-containing protein 39
TrEMBLA0A444WXJ30.0A0A444WXJ3_ARAHY; Uncharacterized protein
STRINGGLYMA17G12560.21e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-89C3H family protein