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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.E51AM | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | ARF | ||||||||
| Protein Properties | Length: 911aa MW: 100571 Da PI: 5.3594 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 34.8 | 3e-11 | 158 | 239 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
f+k+lt sd++++g +++p++ ae+ +++++ e+ + ++++r++lt+GW+ Fv +++L++gD+v+F ++++ +l+v+v
Araip.E51AM 158 FCKTLTASDTSTHGGFSVPRRAAEKLfpPLPPTQ--------------ELVV---RQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQLRVGV 236
8999999999999999999999999966555544..............3445...77899*************************..4577778**** PP
E-S CS
B3 97 frk 99
+r
Araip.E51AM 237 RRV 239
985 PP
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| 2 | Auxin_resp | 113.9 | 1.5e-37 | 264 | 347 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaas++ +F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+++
Araip.E51AM 264 AAHAASNRIPFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQ 347
79**********************************9********************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 8.5E-33 | 146 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 9.7E-24 | 151 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.48E-14 | 157 | 238 | No hit | No description |
| SMART | SM01019 | 6.8E-11 | 158 | 240 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 9.0E-9 | 158 | 239 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 8.783 | 200 | 240 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 2.9E-32 | 264 | 347 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 7.0E-11 | 802 | 892 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 23.746 | 805 | 889 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 5.1E-8 | 809 | 884 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 911 aa Download sequence Send to blast |
MFKNVESGAA LMASLEEKVK TCGVGVVGGQ TLVAEMKLLK EMQEHSGVRK TLNSELWHAC 60 AGPLVSLPQV GSLVYYFPQG HSEQVAASTR RTATSQIPNY PNLPSQLLCQ VQNVTLHADK 120 DTDEIYAQMS LQPLNSEKDV FPISDFGLKH SKHPTEFFCK TLTASDTSTH GGFSVPRRAA 180 EKLFPPLPPT QELVVRQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLRVGVRRVN 240 RQQTTLPSSV LSADSMHIGV LAAAAHAASN RIPFTIFYNP RACPSEFVIP LAKYRKSVYG 300 TQLSVGMRFG MMFETEESGK RRYMGTIVGI SDLDPLRWPG SKWRNIQVEW DEPGCGDKQN 360 RVSVWEIETP ESLFIFPSLT SSLKRPLQSG FLENDWGALI RRPYIRVPEN GATELANSMP 420 NIYSEHLMKM LLKPQLINNN GAMAMQQESV AMRGTLQDAK TTQAPENHKV NLASTENLPL 480 KNLYSQSVPD QANVVNLHSQ AKNDNHMSSG TVIDKPKLEP EVLNDQMYEI PSAGTGTNIE 540 KVASNPANSQ SVANQLAFLN QNQSQSLAQS GSWPIQPQLE SSVSHPQLVD MPQGDSAIAN 600 SMLPQLDIDE WMVYSSNQTF ANQNRSTGPV SDFQEHSAAL QPQVVNPPMP MNQEVWDQYV 660 KNFKLLSQVD QLTSVCQPGM YSLNGISSSN NLRDLSAESN NQSEICVDVS NSVNTTMVDP 720 STSSTILDEY CTLKERDFQN PQDCIVGNLS SSQDVQSQIT SASLTESHAF PLQDNSGGTS 780 SSHVDFDESS FLQNNSWQPV AAPVRTYTKV QKAGSVGRSI DVTTFKNYEE LIRAIECMFG 840 LDGLLNDTKG SGWKLVYVDY ESDVLLVGDD PWEEFVGCVR CIRILSPSEV QQMSEEGMKL 900 LNSGALQGIN V |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 11 | 372 | 1 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.E51AM |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025657714.1 | 0.0 | auxin response factor 5 isoform X1 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A444YGE9 | 0.0 | A0A444YGE9_ARAHY; Auxin response factor | ||||
| STRING | GLYMA14G40540.1 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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