PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.B2ALV

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 598aa MW: 68789.8 Da PI: 7.9508

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.B2ALV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	9.9e-20	103	193	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY+ YAk+ GF vrk+k +++ +n+ +t+++fvC ++g+r+ + +++r+ +aetr+gC+ak++v+ + +g+w ++ +++ nH++ Araip.B2ALV 103 FYSLYAKMNGFAVRKNKIQRNVKNE-VTQQEFVCFRQGSRDIGFVNdgLRQKREAKAETRCGCEAKMRVHVHLeSGRWIISYFQEVYNHKFL 193 9*****************96665.**********987766667999**************9988*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-17	103	193	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.423	310	342	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0018	317	344	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.0E-4	319	341	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MANCRAEQTM ACMEGESVMN HSDGSLCAKE ERSDAYGPGS NKFEDGGLGV DSKSREYFGD 60 NFYDNWEERA VDGIAKLGCI NFKEITAEIM MCHFSDRSVA FLFYSLYAKM NGFAVRKNKI 120 QRNVKNEVTQ QEFVCFRQGS RDIGFVNDGL RQKREAKAET RCGCEAKMRV HVHLESGRWI 180 ISYFQEVYNH KFLEDRLTCM LSGHRKMDAV IVEQMNMMLK VDIKMPQIYS SFVHTGEGFQ 240 NFMRCISQRR SGKAHSDLLS VVGDSPLHDL EMSASNKLTK EIFFLFSPML FRTCTLKVQT 300 HTLSQTCDIY TLSSNIFKCS CLRMESLGIL CDHIVAVLIH VELSDIPDSL SKNARSKVRA 360 FVEKALFCWD STITLDAELK CREMCVLQYG DEAEFVDMMD KVCCEISRLK EKKDCGDLGD 420 RNKVRKASTL EGCVRDPQMA RHPKWQRKDA NHTLVKGVKR CNICHHIGHN RLSCQLNPNS 480 RRNTQEGASY FGTEGEDETG MIGDSSEECM ANGMYYFRWR GMVQQSLDWP RTITQREKYH 540 IHTSTESAYI SFEWKDNMVG RIKSCHSIYQ TLCSRCSRNL VSHKIMHYAL YLKQKMYV

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MANCRAEQTM ACMEGESVMN HSDGSLCAKE ERSDAYGPGS NKFEDGGLGV DSKSREYFGD  60
NFYDNWEERA VDGIAKLGCI NFKEITAEIM MCHFSDRSVA FLFYSLYAKM NGFAVRKNKI  120
QRNVKNEVTQ QEFVCFRQGS RDIGFVNDGL RQKREAKAET RCGCEAKMRV HVHLESGRWI  180
ISYFQEVYNH KFLEDRLTCM LSGHRKMDAV IVEQMNMMLK VDIKMPQIYS SFVHTGEGFQ  240
NFMRCISQRR SGKAHSDLLS VVGDSPLHDL EMSASNKLTK EIFFLFSPML FRTCTLKVQT  300
HTLSQTCDIY TLSSNIFKCS CLRMESLGIL CDHIVAVLIH VELSDIPDSL SKNARSKVRA  360
FVEKALFCWD STITLDAELK CREMCVLQYG DEAEFVDMMD KVCCEISRLK EKKDCGDLGD  420
RNKVRKASTL EGCVRDPQMA RHPKWQRKDA NHTLVKGVKR CNICHHIGHN RLSCQLNPNS  480
RRNTQEGASY FGTEGEDETG MIGDSSEECM ANGMYYFRWR GMVQQSLDWP RTITQREKYH  540
IHTSTESAYI SFEWKDNMVG RIKSCHSIYQ TLCSRCSRNL VSHKIMHYAL YLKQKMYV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.B2ALV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A445AFH9	0.0	A0A445AFH9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3613	6	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-12	FAR1-related sequence 10