PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.A7VQW | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 236aa MW: 27160.7 Da PI: 9.9722 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.8 | 5.7e-26 | 65 | 150 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGF vr+sk ++ + +++ + r fvC+keg+r + k++ + r+raetr+gCka+++v+k k+g w+vt++++eH+H+la Araip.A7VQW 65 FYNAYATSVGFIVRVSKARS-RIDNSAIGRIFVCNKEGYRMTGKRE--NVLRQRAETRVGCKAMIMVRKAKSGSWVVTHFVKEHTHPLA 150 **************998655.68888***************99988..8999***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-23 | 65 | 150 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
RRDVLGNTIH QFPDSKSQSF ENLQELTAGK VAANLESPRS RIYRNSPVEP YVGQEFESEA 60 EAHAFYNAYA TSVGFIVRVS KARSRIDNSA IGRIFVCNKE GYRMTGKREN VLRQRAETRV 120 GCKAMIMVRK AKSGSWVVTH FVKEHTHPLA GPGGGRRDFI YEQYSGERDR IRKLNQQLTA 180 EKKRSVTYKR HLELILEHID EYNESLSKKI QHIVDNVKEM ESKEEQSQLN FQLATL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.A7VQW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025679133.1 | 1e-176 | protein FAR1-RELATED SEQUENCE 4-like | ||||
TrEMBL | A0A444YNU1 | 1e-145 | A0A444YNU1_ARAHY; Uncharacterized protein | ||||
STRING | XP_007131945.1 | 1e-94 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 5e-86 | FAR1 family protein |