PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.9W01L
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 294aa    MW: 32819.9 Da    PI: 7.8258
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.9W01LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l +++k  Gg+ +W++ ++  g+ R++k+c++rw +yl
      Araip.9W01L 14 KGPWTAEEDEILSNYIKNNGGHgSWRSLPKITGLLRCGKSCRLRWTNYL 62
                     79*******************9***********99************97 PP
2Myb_DNA-binding491.4e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
      Araip.9W01L  68 RGPFTSEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-22565IPR009057Homeodomain-like
PROSITE profilePS5129415.081962IPR017930Myb domain
SuperFamilySSF466893.04E-2711109IPR009057Homeodomain-like
SMARTSM007174.5E-101364IPR001005SANT/Myb domain
PfamPF002492.1E-121462IPR001005SANT/Myb domain
CDDcd001676.07E-71662No hitNo description
PROSITE profilePS5129424.6963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2566118IPR009057Homeodomain-like
SMARTSM007172.9E-1467115IPR001005SANT/Myb domain
PfamPF002492.9E-1468113IPR001005SANT/Myb domain
CDDcd001674.28E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRKPCCEKK GLKKGPWTAE EDEILSNYIK NNGGHGSWRS LPKITGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTSEEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLKNM  120
GIDPKTHEPV ASPHYPLDKA HSSSISTRHM AQWESARLEA EARLSTESSK FNKNNPSSLG  180
EGKSTNESDY FLRIWNSEAR RFAVLVNRKT KVDAATAELA LNQLGTSNNG IGGNHVKEEL  240
VLCAEEEGMV VHGSDSSCSN ELEDSSDTAL QLLLDFPINN DMSFLEGNSF DCNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.9W01L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025649318.10.0transcription factor MYB41
SwissprotQ9M2D91e-117MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A444ZM400.0A0A444ZM40_ARAHY; Uncharacterized protein
STRINGXP_007139892.11e-141(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-119myb domain protein 17