PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.9H3WY

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 379aa MW: 42370.8 Da PI: 8.0478

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.9H3WY	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.5e-06	172	191	1	20
CHHHHHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsaf 20 +r++h ++Er+RR+++N+ + Araip.9H3WY 172 QRMTHIAVERNRRRQMNDHL 191 79****************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-9	164	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.53E-6	170	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MPFLQMLQSV EYSPNYSSQQ QCFFPFKDPT NFQTLLRLQH LKNHNNNNNN NNNVQELDQK 60 SCVTHDVMVE MQQQQQQQQS HSPVKSESYE LHQQHHQASA SASCCVENNN NNTTPTKAIT 120 AATEKCGGRG NSNTQEVCQK SQQVGSVATT TRERKKRKRT RPAKNKEDVE NQRMTHIAVE 180 RNRRRQMNDH LSGDQASIIG GAIDFVKELE QLLQSLEAQK RMRRKNNNNN SSNKNEDAIG 240 FGSSSNSSST TNGGYDGIMR SSTTSLSLLS TEEGNFGGGG GNGDELKAEN KSESAEIEVT 300 LIQTHVNLKI QCKRRHGQLV KAIVALEDLR LSILHLNITS SSDDSVLYSL NLKIEEGCRL 360 RSANEIAEAV HHIFNFING

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MPFLQMLQSV EYSPNYSSQQ QCFFPFKDPT NFQTLLRLQH LKNHNNNNNN NNNVQELDQK  60
SCVTHDVMVE MQQQQQQQQS HSPVKSESYE LHQQHHQASA SASCCVENNN NNTTPTKAIT  120
AATEKCGGRG NSNTQEVCQK SQQVGSVATT TRERKKRKRT RPAKNKEDVE NQRMTHIAVE  180
RNRRRQMNDH LSGDQASIIG GAIDFVKELE QLLQSLEAQK RMRRKNNNNN SSNKNEDAIG  240
FGSSSNSSST TNGGYDGIMR SSTTSLSLLS TEEGNFGGGG GNGDELKAEN KSESAEIEVT  300
LIQTHVNLKI QCKRRHGQLV KAIVALEDLR LSILHLNITS SSDDSVLYSL NLKIEEGCRL  360
RSANEIAEAV HHIFNFING

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	158	RKKRKR
2	154	159	KKRKRT
3	172	183	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.9H3WY

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016182436.1	0.0	transcription factor bHLH57 isoform X2
Refseq	XP_025631835.1	0.0	transcription factor bHLH57 isoform X2
Swissprot	Q9M128	2e-56	BH057_ARATH; Transcription factor bHLH57
TrEMBL	A0A445AD26	0.0	A0A445AD26_ARAHY; Uncharacterized protein
STRING	XP_007135328.1	1e-108	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6894	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	5e-38	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]