PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.714GL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 559aa MW: 63262.1 Da PI: 4.3113 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.5e-53 | 18 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +pGfrFhPtdeelv++yLk+k+ gkkl+l +vi e+d+yk++P++Lp + +++++++w+fF++rd+ky++g r+nrat++gyWkatgkd++v++ ++ Araip.714GL 18 MPGFRFHPTDEELVMYYLKRKICGKKLKL-DVILETDVYKWDPEELPgiSVLRTGDRQWFFFTHRDRKYPNGARSNRATRQGYWKATGKDRNVTC-NS 113 69***************************.99***************644778899***************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kktLvfy+grap+ge+tdWvmhey++ Araip.714GL 114 RSVGVKKTLVFYRGRAPNGERTDWVMHEYTM 144 9****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-58 | 15 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.165 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 559 aa Download sequence Send to blast |
MGAEAGATEC FSKAMASMPG FRFHPTDEEL VMYYLKRKIC GKKLKLDVIL ETDVYKWDPE 60 ELPGISVLRT GDRQWFFFTH RDRKYPNGAR SNRATRQGYW KATGKDRNVT CNSRSVGVKK 120 TLVFYRGRAP NGERTDWVMH EYTMDEEELN RCQDIKDYFA LYKLYKKSGP GPKNGEQYGA 180 PFKEEEWADD ECVDFNINSA DREVVNTVPV NDQLPPLADD EVTDMINQIL DNELALDQQF 240 GDDLLEFPQV VAEETQSTVV DQFSEAVTDP EYNDIYHSTS QHYDAQNVNF NQSVASHLHA 300 PEGSEVISTA NIQVEDYNFQ EDDFLEINDL NGSELTIPNM ETPVENLQFE DGLCELDLFQ 360 DAEMFLRDLG PINEETIPHS YMNNAPGSNI ENQNYHLLPN PEDTTQNVHE FWMHDERNTL 420 SLFEGFDDSV SQQNPGAVCD SASFPTTEGY DNQSSIAEDV ATSRFSSALW SFVESIPTTP 480 ASAAENALVN RALNRMSSFS RVKINIKPTN TAAGKDTATT KRVGRKGFSF LFFPILIALC 540 AFLWVSLGTF RLLGRCIAP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-48 | 19 | 144 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.714GL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016175285.1 | 0.0 | NAC domain-containing protein 17 | ||||
Refseq | XP_025677674.1 | 0.0 | NAC domain-containing protein 17 | ||||
TrEMBL | A0A444XU69 | 0.0 | A0A444XU69_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA10G36360.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34180.1 | 1e-135 | NAC domain containing protein 16 |