PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.609AA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 566aa    MW: 62588 Da    PI: 7.885
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.609AAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.19.1e-34215272260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Araip.609AA 215 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGTHNHPK 272
                  8****************************************.***************85 PP
2WRKY106.71.2e-33390448159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Araip.609AA 390 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 448
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-29204273IPR003657WRKY domain
SuperFamilySSF1182901.23E-25213273IPR003657WRKY domain
SMARTSM007749.1E-37214272IPR003657WRKY domain
PROSITE profilePS5081123.778215273IPR003657WRKY domain
PfamPF031061.0E-25215271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-38375450IPR003657WRKY domain
SuperFamilySSF1182901.16E-29382450IPR003657WRKY domain
PROSITE profilePS5081138.147385450IPR003657WRKY domain
SMARTSM007741.2E-39390449IPR003657WRKY domain
PfamPF031064.9E-26391448IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MASSSGTLDT TSASNSYTNN FTFSTHPFMT TSFSELLASS AEDKPRASAS AVGVPKFKST  60
PPPSLPLSPP PISPSSYFAI PPGLSLLLIL PSPTTGAFVA HNYNNWKNNN NNSGGNQQQV  120
IIKEEEGKNH NFSNFSFQTQ PSMFQSSSTA TTKTQQQQPW GFQESNKKQE NFSSSNTVMK  180
TENTCSNQNN NGFQSDYNSN NNYQPQSQTL SRRSDDGYNW RKYGQKQVKG SENPRSYYKC  240
TFPNCPTKKK VERSLDGQIT EIVYKGTHNH PKPQNTRRNS SSSSNSAAFA IAPSNQMNNS  300
EVTDHQSYTH GSGQMDSVAT PENSSISVGD DDFEQSSQRC KSGGDDYDDD EPDAKRWKIE  360
GENEGISGGG SRTVREPRVV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHPG  420
CPVRKHVERA SHDLRAVITT YEGKHNHDVP AARGSGSHAS VNRPMPNNHH NNASIAIRPL  480
PSMTHHNNNN TNNTTSLQQG PEGQSPFTLE MLQNPSSYGF SSSGFGNPMG SYMPQQQQQQ  540
QQSDNVFSSR AKEEPRDDMF LESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37215451878Probable WRKY transcription factor 4
2lex_A2e-37215451878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.609AA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025665865.10.0WRKY transcription factor WRKY24 isoform X2
SwissprotQ6IEQ71e-136WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A444YBJ50.0A0A444YBJ5_ARAHY; Uncharacterized protein
STRINGGLYMA14G38010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-107WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]