PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2XW30
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 307aa    MW: 33871.6 Da    PI: 7.3456
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2XW30genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.4e-10956447
                     S-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                     W+ eE++ + +a++++  +     +W++Ia++++ ++t +++k ++q +
      Araip.2XW30  9 WSYEEEKAFENAIAMHWIEedskeHWEKIAEEVP-TKTIEELKQHYQLL 56
                     ****************9999**************.***********965 PP
2Myb_DNA-binding38.92e-12136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
      Araip.2XW30 136 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 180
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.328461IPR017884SANT domain
SMARTSM007173.7E-5559IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-8761IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-4856IPR009057Homeodomain-like
CDDcd001672.33E-8957No hitNo description
PfamPF002496.7E-7955IPR001005SANT/Myb domain
PROSITE profilePS5129416.873129185IPR017930Myb domain
SuperFamilySSF466898.22E-17131186IPR009057Homeodomain-like
SMARTSM007172.3E-10133183IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.3E-17133183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.6E-11134179IPR009057Homeodomain-like
PfamPF002497.6E-11136180IPR001005SANT/Myb domain
CDDcd001671.07E-9136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSSSSGTIWS YEEEKAFENA IAMHWIEEDS KEHWEKIAEE VPTKTIEELK QHYQLLVEDV  60
TAIEAGQIPF PNYTSEETTS SSKDLHGSSK SSNSDKRSNC NYGSGFSGLG HDSSTSHNGK  120
GSLSRSSEQE RRKGIPWTEE EHRLFLLGLD KFGKGDWRSI SRNFVISRTP TQVASHAQKY  180
FIRLNSMNRD RRRSSIHDIT SVNNGDVANN QAPITGQHGG TTISSSTIAM GQSMKHRAQP  240
HHHHHHIPAG LGMYGAPVGH PVAAPHGHMA SAVGTPVMLP PGPHPHPHHP PYVVPLAYPM  300
APPTMHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-15275475RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2XW30
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086820.0KF208682.1 Arachis hypogaea putative MYB-related protein 28 (MYB28) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189009.10.0transcription factor MYBS1
RefseqXP_025644418.10.0transcription factor MYBS1
SwissprotQ9FNN64e-83SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A445A1X00.0A0A445A1X0_ARAHY; Uncharacterized protein
STRINGXP_007155139.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.14e-75MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]