PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.26A5I

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 522aa MW: 60728.9 Da PI: 9.793

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.26A5I	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.4	1.4e-19	11	100	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +f+++Y+ ++GF+vr+ + +k k ++++ + ++ C keg+r+++k++ + ++++ aetrt+C+ ++ +k + +k+++ +lel+HnH l+ Araip.26A5I 11 DFWKSYGGMMGFDVRQLYANKCKLDNSVSSFRLICAKEGQRRPDKRD-HLTKQPLAETRTSCQVRMSLKFARdIKKYVICDLELNHNHILQ 100 69*****************************************99.99***************99989************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-14	11	99	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MEFDTVLEAK DFWKSYGGMM GFDVRQLYAN KCKLDNSVSS FRLICAKEGQ RRPDKRDHLT 60 KQPLAETRTS CQVRMSLKFA RDIKKYVICD LELNHNHILQ IPETSHMMPS QRKISEVQAL 120 QIDLADEAGI RPKETHELTS LQAGGKDVLG YTKQDQKNYL RSKRKQDLAY GEADQFQFQE 180 SWDALLQRYK VEDNSWLKSI YKVKEKWAHC YMKKVCTIGM RSTQLSESFN SDLKDFMRSS 240 LDIIHFLKQF ERVVGGKRYK ELQAEYNARQ KLPRLKMIHS PLLKHAAQSS AAYIVSRTEN 300 NQISEYQVAY IVSPQLAQQP SICGMFETMG FLCCHSLKVL NVWDVKQIPA QYIMKRWTRE 360 AREMIVHDSD GKVVQSDTRA DATARYKNIC FKAIKLAARS SDFEVTSNFV EQVIEEAYKK 420 VDSFCRHNQD DDVSNILNAK EIVNSCSDGD ALERLLENVK GLKKRKDKKV EKDSRVGLKN 480 NQTREWRQQK KVPPKIVRLK FSLQILKIKL FCHFNHGIKL QH

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MEFDTVLEAK DFWKSYGGMM GFDVRQLYAN KCKLDNSVSS FRLICAKEGQ RRPDKRDHLT  60
KQPLAETRTS CQVRMSLKFA RDIKKYVICD LELNHNHILQ IPETSHMMPS QRKISEVQAL  120
QIDLADEAGI RPKETHELTS LQAGGKDVLG YTKQDQKNYL RSKRKQDLAY GEADQFQFQE  180
SWDALLQRYK VEDNSWLKSI YKVKEKWAHC YMKKVCTIGM RSTQLSESFN SDLKDFMRSS  240
LDIIHFLKQF ERVVGGKRYK ELQAEYNARQ KLPRLKMIHS PLLKHAAQSS AAYIVSRTEN  300
NQISEYQVAY IVSPQLAQQP SICGMFETMG FLCCHSLKVL NVWDVKQIPA QYIMKRWTRE  360
AREMIVHDSD GKVVQSDTRA DATARYKNIC FKAIKLAARS SDFEVTSNFV EQVIEEAYKK  420
VDSFCRHNQD DDVSNILNAK EIVNSCSDGD ALERLLENVK GLKKRKDKKV EKDSRVGLKN  480
NQTREWRQQK KVPPKIVRLK FSLQILKIKL FCHFNHGIKL QH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	459	465	KGLKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.26A5I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025611665.1	1e-149	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B8B4I7	1e-122	B8B4I7_ORYSI; Uncharacterized protein
TrEMBL	B9FSI2	1e-122	B9FSI2_ORYSJ; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	1e-28	FAR1-related sequence 1