PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8409s0011.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 323aa    MW: 36449.3 Da    PI: 7.0839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8409s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.5e-06426326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         + lC+ f+  G C  G++C F+H+
  Araha.8409s0011.1.p  4 RILCK-FFVHGSCLKGENCEFSHD 26
                         569**.7777*************6 PP
2zf-CCCH222.9e-073454526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          C f+++ G+C yG+rC++ H+
  Araha.8409s0011.1.p 34 VCTFYQK-GICFYGSRCRYDHV 54
                         5******.*************7 PP
3zf-CCCH20.86.9e-07103125326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C+ fa+ G C++G++C+ +Hg
  Araha.8409s0011.1.p 103 YPICS-FAAAGDCPRGNQCPHMHG 125
                          78999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.84128IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-7426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4629IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2672956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00213055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-53153IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-53454IPR000571Zinc finger, CCCH-type
SMARTSM003560.028100126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.155100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.38E-13157233No hitNo description
Gene3DG3DSA:3.30.40.102.5E-10161228IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001627.96E-4168228No hitNo description
SMARTSM001842.5E-7169226IPR001841Zinc finger, RING-type
PfamPF000974.3E-8169226IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.489169227IPR001841Zinc finger, RING-type
PROSITE patternPS005180193202IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010314.126256285IPR000571Zinc finger, CCCH-type
SMARTSM003560.15256284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSDRILCKFF VHGSCLKGEN CEFSHDSKDP PNNVCTFYQK GICFYGSRCR YDHVRAASNV  60
PLSLDSESLD RSISTTPSRN LQQQGTPDNN DGDNVYCIHP REYPICSFAA AGDCPRGNQC  120
PHMHGDLCNT CGKKCLHPFR PEEREEHTKE CEKKQKHIEA LKQSQDIECS VCLDRILSKA  180
TPGERKFGLL TECDHPFCIQ CIRNWRSSAP VSGMDVNSTL RACPICRKLS YFVVPSVVWY  240
STPEEKKEII DIYKAKLRSI DCKHFNFGNG NCPFGASCFY KHAYSDGHLE EVVLRHLGSQ  300
EGETVITDNI RLFELLGGLQ IF*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8409s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0703660.0AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889252.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLD7L7490.0D7L749_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.3__850__AT3G08505.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.20.0C3H family protein