PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7805s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 486aa    MW: 53389.3 Da    PI: 5.3218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7805s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00179101123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cgk+F +   L  H r H
  Araha.7805s0010.1.p  79 HICGECGKRFVSGKALGGHKRIH 101
                          68**************9999998 PP
2zf-C2H210.80.0015132152323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C  C k F++   L  H+r H
  Araha.7805s0010.1.p 132 CCVCYKKFTSMKALYGHMRFH 152
                          *******************99 PP
3zf-C2H211.30.0011336358123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  C+ksFs+   L  H  +H
  Araha.7805s0010.1.p 336 HVCVTCNKSFSSYQALGGHRASH 358
                          79***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-574102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-777152No hitNo description
SMARTSM003550.2279101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.32379106IPR007087Zinc finger, C2H2
PfamPF139126.8E-879101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM003554.6130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.725130152IPR007087Zinc finger, C2H2
PfamPF139120.0032132153IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.25E-6335358No hitNo description
SMARTSM003550.38336358IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-10336360IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577336363IPR007087Zinc finger, C2H2
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
SuperFamilySSF576671.25E-6400427No hitNo description
SMARTSM003550.36405427IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-12405428IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494405427IPR007087Zinc finger, C2H2
PROSITE patternPS000280407427IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEHLRGYKTN CGFSLGKPRF GSMKVKIPRI QPCIAEKGKE RDEDEEVLEE EEEDDHGAKS  60
MDLEEGDVEE VEEKEEKKHI CGECGKRFVS GKALGGHKRI HALETRKFSM MRPKMVSGMV  120
GRSERGDLEV ACCVCYKKFT SMKALYGHMR FHPDRGWKGV LPPPPLSHPL GNSSSSTLSI  180
DDHDDEFISS DYDDDDFDDD DDENSELWDS NLELENVVEP IKGWSTKGKR GSRSALRFDE  240
LDLKDPSPED VKDIDDANGL LFLATTAEAA ANLNVAETSV SHSVEEKYLE MVKKRKKKQK  300
RLSEMEKEST STHDHQLDQV VAVAEEGGGA SAREKHVCVT CNKSFSSYQA LGGHRASHNK  360
VKILENHQAR ANAEASLLGT EAITTGLASA QGSNTSLSSS HNGDHVCNIC HKSFSTGQAL  420
GGHKRCHWTG PVSTEAATAA STAAPTAPGG ASSSQVTETV QEVKKLKRKF LEFDLNELPP  480
NEEEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292296KKRKK
2292300KKRKKKQKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7805s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230290.0AB023029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24C1.
GenBankAB4937940.0AB493794.1 Arabidopsis thaliana At5g56200 gene for hypothetical protein, partial cds, clone: RAAt5g56200.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879471.10.0zinc finger protein ZAT4
TrEMBLD7ML890.0D7ML89_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.8__1525__AT5G56200.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.10.0C2H2 family protein