PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.68078s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 483aa MW: 53365.9 Da PI: 5.5303

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.68078s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	40.8	5e-13	9	40	25	56
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRla 56 e+A+Pktil+ m+v+g+++++++SHLQkYR + Araha.68078s0001.1.p 9 EEAVPKTILQYMNVDGISRSQIASHLQKYRKH 40 68****************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.77E-7	6	43	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-11	9	40	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.5E-11	9	44	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MLYFLYHFEE AVPKTILQYM NVDGISRSQI ASHLQKYRKH MRKVKERAKE VNMSKKAMKS 60 NVASSSNINP QGSYKYVRGL SKENLFKAQL GDGPGQPSIL LNNNDSIYSM HDGLTYDLSQ 120 NGSNLLPMGG SHGFSRGMWP LHEESISVLP LNEERRSVFG TSQMSQVPRP GQYGTPSDIS 180 GMNTNLDTGY MRNSYAGISI DKNGHLSGLG GERVSGNDNG YLGESLDAMN WTLNNNIVRN 240 HGSSTSRFSA PFSSFLHNKV QQTDDLLPRS IFDTSQAPQV PSFGQYGITN DVIDMKPDFG 300 TGYMHNNSTG IITDQIGNLV GLGGARVNGN GNVSPGQNLG TMNWNFDENN MSNYGSSNSR 360 FSSPFSLFNE DQSLSHLNAQ TDELVPVLEN LSLYNDHQSI NPFAGNSNFL QYQHQGQVSD 420 TNFQFANDDQ LEKNAMLAAC SIEDINNLSI NNVKESSNEE TLNSIAANLE MLFPTHDMNI 480 INQ

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MLYFLYHFEE AVPKTILQYM NVDGISRSQI ASHLQKYRKH MRKVKERAKE VNMSKKAMKS  60
NVASSSNINP QGSYKYVRGL SKENLFKAQL GDGPGQPSIL LNNNDSIYSM HDGLTYDLSQ  120
NGSNLLPMGG SHGFSRGMWP LHEESISVLP LNEERRSVFG TSQMSQVPRP GQYGTPSDIS  180
GMNTNLDTGY MRNSYAGISI DKNGHLSGLG GERVSGNDNG YLGESLDAMN WTLNNNIVRN  240
HGSSTSRFSA PFSSFLHNKV QQTDDLLPRS IFDTSQAPQV PSFGQYGITN DVIDMKPDFG  300
TGYMHNNSTG IITDQIGNLV GLGGARVNGN GNVSPGQNLG TMNWNFDENN MSNYGSSNSR  360
FSSPFSLFNE DQSLSHLNAQ TDELVPVLEN LSLYNDHQSI NPFAGNSNFL QYQHQGQVSD  420
TNFQFANDDQ LEKNAMLAAC SIEDINNLSI NNVKESSNEE TLNSIAANLE MLFPTHDMNI  480
INQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.68078s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016880	1e-111	AB016880.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG10.
GenBank	CP002688	1e-111	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020881442.1	0.0	uncharacterized protein LOC9300849 isoform X3
Refseq	XP_020881449.1	0.0	uncharacterized protein LOC9300849 isoform X4
TrEMBL	D7MLA4	0.0	D7MLA4_ARALL; Uncharacterized protein
STRING	fgenesh1_pm.C_scaffold_8001787	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17441	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62110.1	1e-174	G2-like family protein

Link Out ? help Back to Top
Phytozome	Araha.68078s0001.1.p