PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.25108s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 291aa MW: 33385.2 Da PI: 5.7414

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.25108s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.9e-11	114	160	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L llP + kK +K++iL A+ +k+Lq Araha.25108s0001.1.p 114 EHVLAERKRREKLSQKFIALSALLPGL-----KKTDKVTILDDAISRMKQLQ 160 5899*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.602	110	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-16	114	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-8	114	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.75E-10	115	164	No hit	No description
SuperFamily	SSF47459	9.42E-16	115	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-13	116	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MDEDFFLTDF SLEDIDFDFN IYEEKNLSPD ESNSQRSADQ SSKFDHQMHL EFLREQPKPV 60 VKINNKQQLI SFDFSSNVSY SPAAEEIIMD KLVGRGTKRK TCFHGTRSPV LAKEHVLAER 120 KRREKLSQKF IALSALLPGL KKTDKVTILD DAISRMKQLQ EQLRKLKEEK EATREIQSRI 180 LVKKSKVLFD EEPNLSSSTL DHDQFDQALP EIEAKISQND VLIRIHCEKS KGCMINILNT 240 IENLQLRIEN TIVLPFGDST LDITVLAQMD KDFSVSVLKD LVRDLRLAMV *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	123	ERKRRE
2	119	124	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.25108s0001.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446550	0.0	DQ446550.1 Arabidopsis thaliana clone pENTR221-At2g22760 basic helix-loop-helix family protein (At2g22760) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020882825.1	0.0	transcription factor bHLH19
Swissprot	Q1PF16	1e-180	BH019_ARATH; Transcription factor bHLH19
TrEMBL	D7LE34	0.0	D7LE34_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.4__197__AT2G22760.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	1e-170	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.25108s0001.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]