PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.23334s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 304aa MW: 33798 Da PI: 8.6729 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.2 | 2.6e-19 | 222 | 256 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C ttkTp+WR+gp g ktLCnaCG+++r+ +l Araha.23334s0008.1.p 222 CTHCETTKTPQWREGPKGRKTLCNACGVRFRSGRL 256 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.3E-19 | 216 | 266 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.991 | 220 | 252 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-14 | 220 | 279 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.9E-15 | 220 | 253 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.86E-15 | 221 | 270 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 222 | 247 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.4E-17 | 222 | 256 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MNRLPEAEAE EDFKGLLSGD FFDDLINHLD CPLEDIDSTN VEGDWVARFQ DLEPPPMDMF 60 PSLPSDLISC ATGGRLGIQR NMIPAFKQSC SSEALSGINT TLHQSSAPPD IKVSKLFQSL 120 SPVSVLENSY GSLSTQNSGS QRLAFPVKGM RSKRKRPTTL RLSYLFPSEP RKPEKSTPGE 180 SESESYYSSE QHAKKKRKIH LTNHTVSSSS EASNSDGIVR KCTHCETTKT PQWREGPKGR 240 KTLCNACGVR FRSGRLVPEY RPASSPTFIP SVHSNSHRKI VEMRRKDDEQ FDTSMMRAVI 300 SRG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.23334s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229366 | 0.0 | AK229366.1 Arabidopsis thaliana mRNA for putative GATA transcription factor 3, complete cds, clone: RAFL16-61-D15. | |||
GenBank | BT014974 | 0.0 | BT014974.1 Arabidopsis thaliana At1g08010 gene, complete cds. | |||
GenBank | BT015713 | 0.0 | BT015713.1 Arabidopsis thaliana At1g08010 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020866855.1 | 0.0 | GATA transcription factor 11 | ||||
Swissprot | Q6DBP8 | 0.0 | GAT11_ARATH; GATA transcription factor 11 | ||||
TrEMBL | D7KHX9 | 0.0 | D7KHX9_ARALL; Zinc finger family protein | ||||
STRING | fgenesh2_kg.1__806__AT1G08010.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1681 | 25 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 0.0 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
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Phytozome | Araha.23334s0008.1.p |