PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.2280s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 447aa MW: 50075.3 Da PI: 6.2365 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.5 | 4e-10 | 158 | 200 | 3 | 42 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeN 42 e + rr+++NReAAr+sR+RKka++++Le+ + ++Le+e Araha.2280s0002.1.p 158 EQRTLRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEEL 200 567789***********************98333455555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.5E-6 | 156 | 227 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.347 | 158 | 202 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.9E-7 | 160 | 200 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 1.43E-20 | 160 | 208 | No hit | No description |
SuperFamily | SSF57959 | 7.5E-7 | 160 | 203 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-7 | 162 | 205 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 163 | 178 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.5E-27 | 245 | 318 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MQSSFKTVPF NPDFYSQSSF FFRGDSCLEE FHQPVYGFHH EEAIDLSPNV TIASANLHYT 60 TFDTVMECGG GGGLRERLEG EEECLDTGQL VYQKGTRLVG GEVNSSWCDS VSAMADNSQH 120 TDTSTDIDTD DKTQLNGVHQ GMLLATNCSD QSKVKSCEQR TLRRLAQNRE AARKSRLRKK 180 AYVQQLENSR IRLAQLEEEL KRARQQGSLV ESGVSVDHSH LAAGNGAFSF ELEYTRWKEE 240 HQKLINDLRS GVNSLLGDND LRVLVDAVMS HYDEIFRLKG IGTKVDVFHM LSGMWKTPAE 300 RFFMWLGGFR SSELLKILGN HVDPLTDQQL IGICNLQQSS QQAEDALSQG MEALQQSLLE 360 TLSSASMGPN SSANVADYMG HMAMAMGKLG TLENFLRQAD LLRQQTLQQL HRILTTRQAA 420 RAFLVIHDYI SRLRALSSLW LARPRD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.2280s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118286 | 0.0 | AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21. | |||
GenBank | BT008586 | 0.0 | BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889619.1 | 0.0 | transcription factor PERIANTHIA isoform X1 | ||||
Swissprot | Q9SX27 | 0.0 | PAN_ARATH; Transcription factor PERIANTHIA | ||||
TrEMBL | D7KWE6 | 0.0 | D7KWE6_ARALL; Transcription factor perianthia | ||||
STRING | fgenesh2_kg.2__1120__AT1G68640.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.2280s0002.1.p |