PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20024s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 728aa    MW: 83144.1 Da    PI: 5.0953
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20024s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.52e-15209261255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            r  Wt+e H +F+ a++ L G++   Pk+il +m+ + Lt  +v SHLQkY+ 
  Araha.20024s0001.1.p 209 RRSLWTNERHMKFLAAISIL-GEKDFRPKSILTIMNDPNLTYRQVGSHLQKYKA 261
                           5889****************.9999***************************85 PP
2Response_reg21.89.1e-091588175
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE CS
          Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii 75
                          +l++d + +    l+++l++    +v ++d +++al ++++++  ++li+  iemp++d+  +l+ +  ++  +p i
  Araha.20024s0001.1.p 15 ILLIDHDTASVASLTSMLKQFSK-RVMSVDVASKALSMIEKQKkdIGLIIANIEMPHIDADSFLTVLLHKD--IPLI 88
                          799999*************7777.888888888888888555555***************99998885444..4555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.55E-911140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.1E-1013145No hitNo description
PROSITE profilePS5011020.11614128IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-41591IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.72E-716128No hitNo description
SuperFamilySSF466891.52E-13207265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-17208265IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-14209260IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MARSLVHESF DDISILLIDH DTASVASLTS MLKQFSKRVM SVDVASKALS MIEKQKKDIG  60
LIIANIEMPH IDADSFLTVL LHKDIPLILI NPEIKTKKPS DLLIKRACFS LDQPISENDI  120
KNIWQHVLPN RIQESKKINI NQIEVFRASL KRQRTSQASL LGRQPFIDAF TISETSQKRK  180
SRANVEWKTK PGCLIEIENK RMDCSVVRRR SLWTNERHMK FLAAISILGE KDFRPKSILT  240
IMNDPNLTYR QVGSHLQKYK AQIERISDTL PKNECKSTDE TFEYHSDYKY HFKTSDLLNN  300
LIASNSLWNS LRKKNSSSSS MSQFLFKKPI AERKKNMPKF QVGEKSDLSN HSLVGNVFNK  360
SSINVNYVPS TISNNPPYNI LSTDNANHTS LVSTGLGSEN LPILSGLPSN VRASNTCAFQ  420
MESTRISIPQ YDPNPFLPPR SVLETDVNQI DLDFTSTPES FHPLADLCTM NPFETNVDKM  480
DWLPFIENHS HHEINMNHMD WDHSIENFIL LETDVNISFP EKHTNQMDWI SSGEGYVLFE  540
NVSPSKVDIS QMDMGYSGGS ILLQEETNTN HVGFVSSEIR NDIPPKTDMT ILETNYSNLV  600
DCVFPKDISS LETNTIQKDL VSCKTSFAAL DNIVPLEANM EEMNYVPYDE SCDAKIEDLI  660
SFDIDVDEKD MPFWLEDNGF SERDNMMKSC EYHNVEIVNQ RDDLKGEDNF DDYRDCMDWI  720
YKVMNIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20024s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865809.10.0putative two-component response regulator-like APRR6
SwissprotQ9C9F60.0APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBLA0A178WAI40.0A0A178WAI4_ARATH; PRR6
STRINGAT1G68210.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.10.0pseudo-response regulator 6