PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.19755s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 175aa MW: 19257.1 Da PI: 9.453 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.6 | 8.2e-07 | 2 | 29 | 23 | 55 |
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 L+el+P + K +K+++L A+eY+ksLq Araha.19755s0001.1.p 2 LQELIPRC-----NKSTKVSTLDGAIEYMKSLQ 29 999***98.....699****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.44E-6 | 1 | 33 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-9 | 1 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-8 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.448 | 1 | 28 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
TLQELIPRCN KSTKVSTLDG AIEYMKSLQS QIQMISMGQG MMPSMMNEGN MQEFMPHMAM 60 KMMGMNRPPF IPSPGTPFPS PAQIAGVGPS PAYPAPRYPF PNIQTFEPSR VRLPSPVVNQ 120 PQFTAYMNPY SQFVGHHLMQ QPRPPLQSQT TSQLNSGQAS SSKEPEDKDS QPKG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.19755s0001.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001320084.1 | 2e-74 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9SVU7 | 5e-70 | BH056_ARATH; Putative transcription factor bHLH056 | ||||
TrEMBL | D7MD82 | 8e-96 | D7MD82_ARALL; Uncharacterized protein | ||||
STRING | scaffold_701376.1 | 1e-96 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9041 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28800.1 | 4e-49 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.19755s0001.1.p |