PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.18846s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 461aa MW: 50896.7 Da PI: 4.6188 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.8 | 1.2e-35 | 16 | 108 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y++++d+ +++++sws+ +nsfvv++ efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+ Araha.18846s0001.1.p 16 FLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQ 95 9****************************************************************999.........************ PP XXXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkkse 103 k+ l++i r+k + Araha.18846s0001.1.p 96 KQILKSIVRRKPS 108 *********9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.8E-38 | 10 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.0E-57 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.52E-34 | 12 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.9E-19 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-30 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-19 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 55 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MGESVATAVM SSIPPFLSKT YDMVDDPLTD DVVSWSSGNN SFVVWNVPEF AKQFLPKYFK 60 HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKQILK SIVRRKPSQV QPPQQPQVQH 120 SSVGACVEVG KFGLEEEVER LQRDKNVLMQ ELVRLRQQQQ VTEHHLQNVG QKVHVMEQRQ 180 QQMMSFLAKA VQSPGFLNQF SQQSNDANQH ISESNKKRRL PVEDQMNSGS HGVSGLSRQI 240 VRYQSSMNDA TNTMLQQIQQ MSNSPSHESL SSNHGSFLLG DVPNSNLSDN GSSSNGSSGV 300 TLADVSSIPA GLYPAMKYHD PCETNQVLET NLPFSQGDLL PPTQGVAASG SSSSDLVGCE 360 TDNGECLDPI MAVLDGAIEL EADALSELLP EVQDSFWEQF IGESPVIGET DELISGSVEN 420 ELLMGQLELQ SGLGSVWSKN QQMNHLTEQM GLLTSDTLRK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-26 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-26 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-26 | 11 | 105 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00328 | DAP | Transfer from AT3G02990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.18846s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT026365 | 0.0 | BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889453.1 | 0.0 | heat stress transcription factor A-1e | ||||
Swissprot | Q9SCW5 | 0.0 | HFA1E_ARATH; Heat stress transcription factor A-1e | ||||
TrEMBL | D7L0B6 | 0.0 | D7L0B6_ARALL; ATHSFA1E | ||||
STRING | fgenesh2_kg.3__246__AT3G02990.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02990.1 | 0.0 | heat shock transcription factor A1E |
Link Out ? help Back to Top | |
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Phytozome | Araha.18846s0001.1.p |
Publications ? help Back to Top | |||
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