PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1861s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 106aa MW: 11716.4 Da PI: 8.1336 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.6 | 4.7e-29 | 5 | 100 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +Ca+Ck+l+++Ca++C+ apyfp+++ +f+ v k+FGa n+ k++++l +e+r++a+++l y Aear rdP+++++g+il+ ++ l++ Araha.1861s0003.1.p 5 RCAVCKILKETCAQGCISAPYFPSND-TSFEDVSKVFGAVNIRKIIADLnTPEQRQIAANCLRYAAEARRRDPISSCHGIILHHKSILNN 93 6**********************998.79********************67788**********************************99 PP DUF260 90 lkaelal 96 ++++++ Araha.1861s0003.1.p 94 IEQDIEH 100 9998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.185 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-27 | 5 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MTSNRCAVCK ILKETCAQGC ISAPYFPSND TSFEDVSKVF GAVNIRKIIA DLNTPEQRQI 60 AANCLRYAAE ARRRDPISSC HGIILHHKSI LNNIEQDIEH STIRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-19 | 6 | 99 | 12 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-19 | 6 | 99 | 12 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1861s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002893786.1 | 1e-66 | LOB domain-containing protein 32 | ||||
Swissprot | O49651 | 5e-45 | LBD32_ARATH; LOB domain-containing protein 32 | ||||
TrEMBL | D7KJB3 | 3e-65 | D7KJB3_ARALL; Uncharacterized protein | ||||
STRING | scaffold_103765.1 | 4e-66 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22700.1 | 2e-47 | LOB domain-containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Araha.1861s0003.1.p |