PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1448s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 305aa MW: 33923.5 Da PI: 5.0911 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 11 | 31 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+ksFs+ L H+r H Araha.1448s0006.1.p 11 CQICKKSFSNGKALGGHMRAH 31 *******************98 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00076 | 274 | 296 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F + L H + H Araha.1448s0006.1.p 274 YECQICNRVFASGQALGGHKKIH 296 99**********99999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.18 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.6 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 8.5E-7 | 10 | 31 | No hit | No description |
Pfam | PF13912 | 3.9E-8 | 10 | 32 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.0E-4 | 11 | 33 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.5E-7 | 223 | 250 | No hit | No description |
PROSITE profile | PS50157 | 9.598 | 228 | 255 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.0E-9 | 228 | 251 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 228 | 250 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 230 | 250 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.99E-5 | 272 | 297 | No hit | No description |
PROSITE profile | PS50157 | 10.492 | 274 | 296 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.1E-11 | 274 | 296 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.029 | 274 | 296 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 276 | 296 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MYSLLKATKN CQICKKSFSN GKALGGHMRA HTRKLSAGSS SSTGSITPSI RPCNNLGASF 60 RPHETVLVRS VHTSEVVGGP KLDLNKEGEQ QITAKRKIVV VDLEEEDSTE SKSDITIEES 120 ALCLLQMKSD PSEYIQNPKS IDSLVSTRKR KDTEKYIVID SEEDQEDSDE YVAEDEDEDE 180 DDEDEDIKFL TSDMGDLTGD SDEDEDDYAD ENAYYGGKER RGKKQSKYTC DICGQVLHSY 240 QALGGHRTSH RNKRLKISDK NHSAEDGPVV RRGYECQICN RVFASGQALG GHKKIHYMFL 300 APPK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1448s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016887 | 0.0 | AB016887.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCI2. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871892.1 | 1e-163 | zinc finger protein ZAT9 | ||||
TrEMBL | D7MV23 | 1e-160 | D7MV23_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.8__2122__AT5G61470.1 | 1e-161 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14171 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61470.1 | 1e-122 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.1448s0006.1.p |