PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10817s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 378aa    MW: 42840.1 Da    PI: 6.3585
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10817s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.7e-1191134447
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                           +k  rr+++NReAAr+sR+RKka++++Lee   +L++  ++L k
  Araha.10817s0004.1.p  91 DKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQELEK 134
                           7999**************************98888888776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-583146IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-884135No hitNo description
PROSITE profilePS502179.40490134IPR004827Basic-leucine zipper domain
PfamPF001701.2E-791134IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-792134No hitNo description
PROSITE patternPS00036095110IPR004827Basic-leucine zipper domain
PfamPF141441.6E-30179253IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMSSSSPTQL ASLRDMGIYE PFQQIVGWGN VFKSDINDHS PNTATSSIIQ VDPRIDDHNN  60
LKMNYDSSHN QIEAEQPSSN DNQDDDGRTH DKMKRRLAQN REAARKSRLR KKAYVQQLEE  120
SRLKLSQLEQ ELEKAKQQGL CVRNSSDSSY LGLSGSINTG IASFEMEYSH WLQEQSRRVS  180
ELRTALQSHI SDIELKMLVE SCLNHYANLF RMKSDAAKAD VFYLISGMWR TSTERFFQWI  240
GGFRPSELLN VVIPYLQPLT DQQVLEVRNL QQSSQQAEDA LSQGIDKLQQ SLAESIVIDA  300
VIESTDYPAH MAAAIENLQA LEGFVNQADH LRQQTLQQMA KILTTRQSAR GLLALGEYLH  360
RLRALSSLWA ARPREPT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10817s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533840.0AK353384.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-N08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887709.10.0transcription factor TGA7
RefseqXP_020890664.10.0transcription factor TGA7
RefseqXP_020890665.10.0transcription factor TGA7
SwissprotQ93ZE20.0TGA7_ARATH; Transcription factor TGA7
TrEMBLD7KV550.0D7KV55_ARALL; Predicted protein
STRINGAl_scaffold_0002_24970.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.10.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]