PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.0709s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23727.7 Da PI: 10.3276 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.7 | 7.5e-19 | 20 | 69 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k++en+ r +tfskR++gi+KK +EL v+Cd+eva +ifs+ k y+++ Araha.0709s0005.1.p 20 KKVENYGDRMITFSKRKAGIFKKINELVVMCDVEVAFLIFSQAKKPYTFA 69 6789********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.57E-24 | 12 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.801 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-23 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-17 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-20 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-17 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-17 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSTKQAKGRK TKGKQKIEMK KVENYGDRMI TFSKRKAGIF KKINELVVMC DVEVAFLIFS 60 QAKKPYTFAH PSMEEVADRL KNSSRQEPLA KDDTGPLVEA YKKRRFHDLI EKMEALEEEL 120 AMDLEKLKLM KESRNEKKLD KMWWNFPSKG LSMEELKQRH QAIVELRDNL CDNMALLRLG 180 KDGGSSSVRV GRRLSGGVRL FDREA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 2e-13 | 13 | 104 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-13 | 13 | 104 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-13 | 13 | 104 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-13 | 13 | 104 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-13 | 13 | 104 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-13 | 13 | 104 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-13 | 13 | 104 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-13 | 13 | 104 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-13 | 13 | 104 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-13 | 13 | 104 | 1 | 90 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.0709s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC016829 | 0.0 | AC016829.7 Arabidopsis thaliana chromosome III BAC T6K12 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | DQ056586 | 0.0 | DQ056586.1 Arabidopsis thaliana MADS-box family protein (At3g04100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002882329.2 | 1e-144 | MADS-box transcription factor 23 | ||||
TrEMBL | D7L216 | 1e-143 | D7L216_ARALL; MADS-box family protein | ||||
STRING | fgenesh1_pm.C_scaffold_3000303 | 1e-144 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-100 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | Araha.0709s0005.1.p |