PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.ZH4KA

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB

Protein Properties

Length: 323aa MW: 37544.6 Da PI: 6.901

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.ZH4KA	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.9	2e-12	12	57	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W+ eEde l + v+++G ++W++I ++ + Rt+k+c++rw + Aradu.ZH4KA 12 KGPWSREEDEVLQEHVNKYGARDWSSIRSKGLLPRTGKSCRLRWVN 57 79***********************8876677********87 PP
2	Myb_DNA-binding	44.8	2.8e-14	91	131	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eE++l +++ q+G++ W++Ia ++ gRt++++k++w Aradu.ZH4KA 91 KFTEEEEKLVIELQGQFGNK-WAKIATYLE-GRTDNDVKNFWS 131 79****************.*****.*********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.732	7	63	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-19	9	64	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.51E-26	10	61	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-12	11	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.09E-11	14	59	No hit	No description
Pfam	PF13921	3.5E-11	15	64	No hit	No description
PROSITE profile	PS51294	18.844	84	138	IPR017930	Myb domain
SMART	SM00717	5.3E-12	88	136	IPR001005	SANT/Myb domain
Pfam	PF00249	9.6E-13	91	131	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.51E-26	91	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-16	91	132	IPR009057	Homeodomain-like
CDD	cd00167	6.30E-10	91	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MERGFDRRYI KKGPWSREED EVLQEHVNKY GARDWSSIRS KGLLPRTGKS CRLRWVNKLR 60 PNLKIIVRKK PQCALSVWML CMIIVIGRGC KFTEEEEKLV IELQGQFGNK WAKIATYLEG 120 RTDNDVKNFW SSRRKRIERM LRKPSITSSK MQNKNKEKVP LSQVQFEEDI SCSSNKPEEN 180 IPCGNYLPYY TAPYMGNTEE FKMVNLPDLT KPNHQNLESD INTSSQAFEA TPLHVVPSFE 240 SSTTEYTFPQ IPNEPQLEFP VFPEPIDDPY FFDMLEQKSV QNKIGTTVGL DGKPQNESAK 300 CFFEDIPTEI FEYFDHTPTS SDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-22	10	136	25	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.ZH4KA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015937149.1	0.0	myb-related protein 305-like
Refseq	XP_025612034.1	0.0	transcription factor DUO1-like
TrEMBL	A0A444XYM6	0.0	A0A444XYM6_ARAHY; Uncharacterized protein
STRING	XP_007133863.1	1e-109	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3693	31	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	7e-59	MYB family protein