PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.YD7VI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARR-B | ||||||||
Protein Properties | Length: 696aa MW: 76466.9 Da PI: 6.2782 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.3 | 1.7e-28 | 231 | 284 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Aradu.YD7VI 231 KPRVVWSVELHQQFVAAVDQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 284 79*******************.********************************8 PP | |||||||
2 | Response_reg | 60.4 | 1e-20 | 35 | 161 | 1 | 109 |
EEEESSSHHHHHHHHHHHH.....HTTC............EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE CS Response_reg 1 vlivdDeplvrellrqale.....kegy............eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvt 78 vl+vdD+p+ +++l+++l+ ++++ ++ + ++e+al+ll++++ +D+++ D+ mp+mdG++ll++i e +lp+i+++ Aradu.YD7VI 35 VLVVDDDPTCLMILEKMLRtclyeEARFvvltlfqevrafAAITKCNTAEKALTLLRKNKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMS 130 68888888888888888877765555553333332222224455566777777777666699**********************6654.8******* PP STTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 79 ahgeeedalealkaGakdflsKpfdpeelvk 109 a + ++ + + + Ga d+l Kp+ +e+l + Aradu.YD7VI 131 ADDGKNVVMKGVTHGACDYLIKPVRIEALKN 161 ***************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.8E-173 | 10 | 688 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.21E-29 | 32 | 174 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.0E-38 | 32 | 195 | No hit | No description |
SMART | SM00448 | 2.5E-22 | 33 | 163 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 38.109 | 34 | 167 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.1E-18 | 35 | 161 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.51E-23 | 36 | 166 | No hit | No description |
PROSITE profile | PS51294 | 11.518 | 228 | 287 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.81E-20 | 228 | 288 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-30 | 230 | 289 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.5E-25 | 231 | 284 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-7 | 233 | 283 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MNLSNGRGSM STVTSGAAVK SADAVSDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEEA 60 RFVVLTLFQE VRAFAAITKC NTAEKALTLL RKNKNGFDIV ISDVHMPDMD GFKLLEHIGL 120 EMDLPVIMMS ADDGKNVVMK GVTHGACDYL IKPVRIEALK NIWQHVVRKR KNEWRDTEQS 180 GSAEEGDRQQ KASDDADYSS SANESNWRNS KKRRDEEEEA EERDDTSTLK KPRVVWSVEL 240 HQQFVAAVDQ LGIDKAVPKK ILELMNVPGL TRENVASHLQ KYRLYLRRLS GVSQHQNNMN 300 SSFMNPQDAT FGTISSINGI DLQTLAAAGQ LPAQSLATLQ AAGLGRSAPK GGLPMPIMDQ 360 RNLFSFENPR LRFTEGQQQQ QHLSNSKPVN LLHGIPTNME PKQLASLHQS SQPLGNMTVR 420 VNASTQSNPL LMQMAQSQPR GHMLSENTGP HLPRLPSSLG QPSASNGTSN ALMGRNGIAG 480 STRAPGYNPI SQSSSMMNFP INQTTEMPIS SFPLGSTPGI SSITTKGSFQ EEVTSGIKRA 540 GGFVPNYDIF SELQKPHDWE VSNPSLTYNA ASQHANPLHG NIDVSPSVLV QQSFSSNQQT 600 GQSRDANTMI VKPIFSASES MEQGTLQNQH LNTLVTDNSI RVKTERIPDA SSQTNFYPEH 660 YGQEDLMSAL LKQQEGIGPA ENDFDFDGYS LDNVPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-22 | 230 | 290 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.YD7VI |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015937402.1 | 0.0 | two-component response regulator ARR1 isoform X2 | ||||
Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
TrEMBL | A0A445AWJ7 | 0.0 | A0A445AWJ7_ARAHY; Two-component response regulator | ||||
STRING | GLYMA07G37220.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3958 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 0.0 | response regulator 1 |