PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.XU3IM | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Trihelix | ||||||||
Protein Properties | Length: 266aa MW: 31054.6 Da PI: 8.8411 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 90 | 2.5e-28 | 51 | 132 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe+++ i++r e+e+++ ++k++k+lWe vs+kmrergf+rsp+qCk+kw+nl +ryk ++++ ++ s++cp+f++l+ Aradu.XU3IM 51 QWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEH----SRQCPFFEELH 132 7****************************************************************999986....899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.4E-4 | 48 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.2E-23 | 50 | 133 | No hit | No description |
CDD | cd12203 | 2.51E-27 | 50 | 115 | No hit | No description |
PROSITE profile | PS50090 | 7.654 | 52 | 108 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MFAGEDARAA RLAMVAPPQP QMLNPATSSV ISGEISPTTA GREERVPAQP QWSQQETREF 60 IAIRAELERD FTASKRNKTL WEVVSSKMRE RGFRRSPEQC KCKWKNLVNR YKGKETSDPE 120 HSRQCPFFEE LHAVFTERAR NMQRLLLESE ARSAQTKKGV KRSSGERSSE EYSEDDEEVE 180 DDSEEEKPSR SNARKRKVDK TDKSSKANNP SNTFSNTMEK LERERLMIEQ TWREREEQRR 240 MREESRAERR DALLTTLLNK LIHESN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 4e-15 | 52 | 118 | 7 | 73 | DNA binding protein GT-1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.XU3IM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015963057.1 | 0.0 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A444WVB2 | 1e-157 | A0A444WVB2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G35370.2 | 1e-128 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 3e-34 | Trihelix family protein |