PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.X3DNX | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HSF | ||||||||
Protein Properties | Length: 209aa MW: 23840.9 Da PI: 7.8769 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 104 | 1.3e-32 | 35 | 127 | 2 | 102 |
HHHHHHHHHCTG.GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeilede.elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+y++le++ + +++sw+ +g+ f+v+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ weFkh++F++g +++l +i Aradu.X3DNX 35 FLLKTYDLLEESgNGGKIVSWNGDGSGFIVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKR---------WEFKHEKFQRGCRDMLVEI 122 9*********8725579*************************************************999.........******************* PP XXXXX CS HSF_DNA-bind 98 krkks 102 rkk Aradu.X3DNX 123 TRKKC 127 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-34 | 29 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.8E-41 | 31 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.5E-28 | 32 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.7E-11 | 35 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.7E-29 | 35 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-11 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 75 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-11 | 87 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGENDSSNVL DLNLGVGNGG GQVGQSLRPR CPAPFLLKTY DLLEESGNGG KIVSWNGDGS 60 GFIVWSPAEF SELTLPRYFK HNNFSSFIRQ LNTYGFKKIS SKRWEFKHEK FQRGCRDMLV 120 EITRKKCEPS VFPSYLKSSS EENAITSNNS MEESNNNSHQ LLMEENKNLK KERLELQMQI 180 AEFKSLEMKL LECLSQVMDN HQNKSRGQC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 3e-17 | 35 | 125 | 4 | 104 | Putative transcription factor |
5d5x_B | 3e-17 | 35 | 125 | 4 | 104 | Putative transcription factor |
5d5x_E | 3e-17 | 35 | 125 | 4 | 104 | Putative transcription factor |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.X3DNX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015956372.1 | 1e-154 | heat stress transcription factor B-2a-like | ||||
TrEMBL | I3SY63 | 1e-110 | I3SY63_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA01G34490.1 | 1e-110 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 2e-35 | heat shock transcription factor B2A |