PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.W7U8K
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 327aa    MW: 36851.7 Da    PI: 8.2263
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.W7U8KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.2e-182167147
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                 kr+e + +r+vtfskR+ g++ K  ELS+LC+ae a+i+ s+ gkly
  Aradu.W7U8K 21 KRVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETALIVSSQIGKLY 67
                 7899******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-221372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.1331373IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-201482IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-161535IPR002100Transcription factor, MADS-box
PfamPF003191.0E-162267IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-163550IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-165071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MASSHAIIPD KATRKRKIEI KRVEQSNKRH VTFSKRKLGL FNKVTELSIL CQAETALIVS  60
SQIGKLYACG YPSPDAVIHR FPSGXXXXXX XXXXXXXXXX XXXXXXXALK KKQEEKVEVL  120
RAQYESLEEA LKEEKKRLEE AENARKNHNN NGGCLGFSSQ WWENPIDDMD LEELVKFKES  180
LEQLKVNLFA TAEKKIMFQE LMPSPLVSSS SVMAPMQTRV PNFSSILNNY GGFNAVHHPQ  240
QQEHWDYASS SSSNFYSTLK NNVGFNAVHH PQQQAHWDYW NNNGIASSNN QDSLGSCDFG  300
NNAIIAAAKG NGNSSCSFFP SIGFGHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.W7U8K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025625759.10.0agamous-like MADS-box protein AGL23
TrEMBLA0A445EHF00.0A0A445EHF0_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28460.12e-15AGAMOUS-like 59