PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.V0F31 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | G2-like | ||||||||
Protein Properties | Length: 316aa MW: 34989.3 Da PI: 6.5895 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.8 | 5.8e-34 | 33 | 87 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Aradu.V0F31 33 KQRLRWTNDLHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 87 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.746 | 30 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-17 | 32 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-32 | 32 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-26 | 33 | 88 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-9 | 35 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-23 | 119 | 165 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MYHPNNSLVC DHPMDCVATA MDLVNGGNSL ASKQRLRWTN DLHERFVDAV AQLGGPDRAT 60 PKGVLRVMGV QGLTIYHVKS HLQKYRLAKY LPDSSTDGKN AEKKETEDVL SNLDGSSGMQ 120 ITEALKLQME VQKRLHEQLE VQRQLQLRIE AQGKYLKKII EEQQRLGGVL IEAPDWGATA 180 LVTGVTRQED NKTHQATPAT TSESPFLEVA VKEQALAKSL SIDESFSSQH EPLTPDSGCH 240 VGNPTGGPEE ERSTKKQRLN IDGSYSRPEM LLPHQILESN VSSNKQPNVF STPQEEYDHS 300 MGIAAKSVTR NSSRVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-24 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-24 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-24 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-24 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.V0F31 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015940282.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_015940285.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_015940289.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_015940293.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_025613840.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_025613848.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 1e-115 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A445AYF3 | 0.0 | A0A445AYF3_ARAHY; Uncharacterized protein | ||||
STRING | VIT_00s0475g00040.t01 | 1e-146 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8610 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-101 | G2-like family protein |