PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.UGX6Y
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 393aa    MW: 45015 Da    PI: 8.952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.UGX6YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.64.9e-06122146123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y+C+  dC  s++rk++L+rH+  H
  Aradu.UGX6Y 122 YVCTvdDCQASYRRKDHLTRHLLQH 146
                  99*******************9887 PP
2zf-C2H210.90.0014151176123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  +kCp  +C+  Fs k n+ rH +  H
  Aradu.UGX6Y 151 FKCPmeNCNLIFSIKGNMARHVKEiH 176
                  89********************9988 PP
3zf-C2H219.82.1e-06190214123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++Cp   Cgk+F+  s L++H  +H
  Aradu.UGX6Y 190 FVCPeiGCGKVFKFASKLRKHEDSH 214
                  89*******************9888 PP
4zf-C2H215.26.2e-05285310123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  +kC+   C+  Fs+ksnL+ H +  H
  Aradu.UGX6Y 285 FKCEfkGCSCKFSSKSNLVAHKKAvH 310
                  89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355532447IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.49E-7116148No hitNo description
Gene3DG3DSA:3.30.160.602.9E-11117148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024122146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097122151IPR007087Zinc finger, C2H2
PROSITE patternPS000280124146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4149177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.14E-6149177No hitNo description
SMARTSM003550.0086151176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162151181IPR007087Zinc finger, C2H2
PROSITE patternPS000280153176IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-7188216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0054190214IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471190214IPR007087Zinc finger, C2H2
PROSITE patternPS000280192214IPR007087Zinc finger, C2H2
SMARTSM003554.3227252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229252IPR007087Zinc finger, C2H2
SMARTSM0035526255276IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-6266307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-9266322No hitNo description
PROSITE profilePS5015713.193285315IPR007087Zinc finger, C2H2
SMARTSM003550.0031285310IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280287310IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-5309339IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.1316342IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280318342IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MPEIQMDEPM ESGERPVFKD IRRHFCEYCG ICRSKKILIT SHINSQHKLE LKEIMKHIAK  60
SPTTLANNVV LASKNLPTCC STCKAIHLSI IGLDGLVSGR ETSCEAPSRM PQSRFVQDER  120
PYVCTVDDCQ ASYRRKDHLT RHLLQHEGKT FKCPMENCNL IFSIKGNMAR HVKEIHDEGS  180
TSTNVESKQF VCPEIGCGKV FKFASKLRKH EDSHGKFSSI KLQSVDVVCL EPGCMKHFTN  240
NQCLKEHIES CHQYVTCDTC GSRQLKKNIK RHLRTHEADK SLAEFKCEFK GCSCKFSSKS  300
NLVAHKKAVH FKEKPFVCGF PDCGLRFAYK HVRDKHEKTG KHVFTHGDFE EADEQFRSRP  360
RGGRKRVCPT VEMLVRKRVT PPSQLENLLF MQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-131083398183Aart
2i13_B1e-131083398183Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.UGX6Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950526.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-117TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A445EWZ00.0A0A445EWZ0_ARAHY; Uncharacterized protein
STRINGXP_007142319.11e-167(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-110transcription factor IIIA