PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.SW9YM
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 222aa    MW: 24146.3 Da    PI: 7.5622
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.SW9YMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.51.1e-38161161100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l yeA  r+rdPvyG+v++i++lqqq+ +l+ael ++
  Aradu.SW9YM  16 PCGACKFLRRKCVKGCIFAPYFDSEQgTSHFAAVHKVFGASNASKLLMRIPPHKRLDAVLTLSYEALSRVRDPVYGCVAHIFALQQQVVNLQAELTYV 113
                  7***********************9989********************************************************************99 PP

       DUF260  98 kee 100
                  +++
  Aradu.SW9YM 114 QAR 116
                  876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.46115117IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-3716114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDCGGSDENN QQRGGPCGAC KFLRRKCVKG CIFAPYFDSE QGTSHFAAVH KVFGASNASK  60
LLMRIPPHKR LDAVLTLSYE ALSRVRDPVY GCVAHIFALQ QQVVNLQAEL TYVQARLATM  120
HRIPIAAAAA SPPTLHSSSS LDHLASSNAD LQNASNNMGM NFNPPPQPPP HSTPLESSIF  180
INSSDEPPPP LLLEDGDLQT LAREFVTRYL PGVRFQPSNN SH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-38141179111LOB family transfactor Ramosa2.1
5ly0_B6e-38141179111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.SW9YM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950853.11e-164LOB domain-containing protein 19-like
RefseqXP_025657411.11e-164LOB domain-containing protein 19-like
SwissprotO813224e-69LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A445E6H11e-163A0A445E6H1_ARAHY; Uncharacterized protein
STRINGXP_007134896.14e-94(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.18e-63LOB domain-containing protein 31