PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RW9W8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 319aa MW: 35561.9 Da PI: 4.9367 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.7 | 1.7e-27 | 147 | 233 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGF vr+sk ++s+ +++ + r fvC+keg+r ++k++ + r+raetr+gCka+++v+k k+g w+vt++++eH+H+la Aradu.RW9W8 147 FYNAYATSVGFIVRVSKLSRSRIDNSAIGRIFVCNKEGYRMTDKRE--NVIRQRAETRVGCKAMIMVRKVKSGSWVVTRFVKEHTHPLA 233 ******************************************9988..9999***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-25 | 147 | 233 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MPRIPPILFL FYFAVFTLQL LTQAVSRSVF YVNLILMEVE IDGSNNGEAI ENAAMADDCS 60 TDEGNNADEA NNADEGNNAD EGNNGDDGNN IDGRAIVSVQ SQGQDVTQVS AGGAITLAVP 120 ALPVPIVSPV EPYVGQEFES EAEAHAFYNA YATSVGFIVR VSKLSRSRID NSAIGRIFVC 180 NKEGYRMTDK RENVIRQRAE TRVGCKAMIM VRKVKSGSWV VTRFVKEHTH PLAGPGGGRR 240 DFIYEQYPGE RDRIRELNQQ LTAEKKRSAT YKRHLELILE HIDEYNESLS KKIQHIVDNV 300 KEMESKEEQS QLNFQLATL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RW9W8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015952131.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A445E424 | 0.0 | A0A445E424_ARAHY; Uncharacterized protein | ||||
STRING | XP_007150433.1 | 1e-111 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-91 | FAR1 family protein |