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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aradu.RN1PL | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | G2-like | ||||||||
| Protein Properties | Length: 319aa MW: 34894 Da PI: 6.6867 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 107.9 | 5.5e-34 | 42 | 96 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
Aradu.RN1PL 42 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 96
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 14.485 | 39 | 99 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.3E-32 | 41 | 97 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 8.06E-18 | 41 | 96 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.2E-25 | 42 | 97 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.3E-9 | 44 | 95 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 1.7E-23 | 129 | 175 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 319 aa Download sequence Send to blast |
MYHQKSVPSS SLIGSNSLVH GSSTMDPGNG DNLSNNPNLA SKQRLRWTHE LHERFVDAVA 60 QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH LQKYRLAKYL PDSSSDEGKK TDKKEAGDML 120 SNLDGSPGMQ ITEALKLQME VQKRLHEQLE VQRQLQLRIE AQGKYLKKII EEQQRLSGVL 180 SDVPGSGIAG QVPEDTCPDP DNKTDPATPD PEKAAKERAP AKSLSNESFS SHHEPLTPDS 240 GSPADSPKGE RSTKRQKVSV EATFSKPDMV LPHQILESSM SSYQQSSTVF LTQDQFDPSL 300 GMSARNSEEL EKVGSGSNI |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 1e-23 | 42 | 99 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-23 | 42 | 99 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 1e-23 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 1e-23 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 1e-23 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 1e-23 | 42 | 99 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-23 | 42 | 99 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-23 | 42 | 99 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-23 | 42 | 99 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-23 | 42 | 99 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-23 | 42 | 99 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-23 | 42 | 99 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Aradu.RN1PL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015959147.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
| Refseq | XP_015959148.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
| Refseq | XP_015959149.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
| Refseq | XP_025694148.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
| Refseq | XP_029153584.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
| Refseq | XP_029153585.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
| Swissprot | Q9SJW0 | 1e-113 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
| TrEMBL | A0A445DJ31 | 0.0 | A0A445DJ31_ARAHY; Uncharacterized protein | ||||
| STRING | XP_004486394.1 | 0.0 | (Cicer arietinum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8610 | 33 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G01060.1 | 3e-91 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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