PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.QH23N | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 185aa MW: 20473.7 Da PI: 8.9713 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.5 | 4.1e-28 | 5 | 107 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C++dCv++p++ p++q++++ +++k++G++ +l+l++a+p++ +++++sl+yeA+ r+ +P yG++g+++++q+ +++++ Aradu.QH23N 5 SCNGCRILRKGCNDDCVIRPCLqwinsPESQANATLFLAKFYGRTGLLNLITAAPKNLAPAVFRSLLYEACGRIVNPAYGSMGLFWTGQWARCEAAVR 102 6********************************************************************************************99988 PP DUF260 94 lallk 98 ++l++ Aradu.QH23N 103 AVLMG 107 77665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.33 | 4 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-23 | 5 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MMKISCNGCR ILRKGCNDDC VIRPCLQWIN SPESQANATL FLAKFYGRTG LLNLITAAPK 60 NLAPAVFRSL LYEACGRIVN PAYGSMGLFW TGQWARCEAA VRAVLMGSKP NDDVAPFHSP 120 SWGSCDIRHV PRLNTGLVDV RDRTGKIFKP QPRVALLDSD VLSQIQPNRA TKETEINLEL 180 SLGFH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.QH23N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015941825.2 | 1e-137 | LOB domain-containing protein 40 | ||||
Refseq | XP_025620675.1 | 1e-137 | LOB domain-containing protein 40 | ||||
Swissprot | Q9CA30 | 4e-57 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A444XUW5 | 1e-133 | A0A444XUW5_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445BEI8 | 1e-133 | A0A445BEI8_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA20G24950.1 | 1e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-59 | LOB domain-containing protein 42 |