PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Q3EMG
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 530aa    MW: 61608.4 Da    PI: 9.1978
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Q3EMGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.76e-2111100190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +f+++Y+ ++GF+vr+ + +k k ++++ + ++vC keg+r+++k++ + ++++raetrt+C+ ++ +k  +  +k+++ +lel+HnH l+
  Aradu.Q3EMG  11 DFWKSYGGMMGFDVRQLYANKCKLDNSVSSFRLVCAKEGQRRPDKRD-HLTKQPRAETRTSCQVRMSLKFARdIKKYVICDLELNHNHILQ 100
                  69*******************************************99.99*******************99989**************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-151199IPR004330FAR1 DNA binding domain
PfamPF044341.3E-6322373IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.334333376IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEFDTVLEAK DFWKSYGGMM GFDVRQLYAN KCKLDNSVSS FRLVCAKEGQ RRPDKRDHLT  60
KQPRAETRTS CQVRMSLKFA RDIKKYVICD LELNHNHILQ ISETSHMMPS QRKISEVQAL  120
QIDLADEADI RPKETHELTN LQAGGKDVLG YTKQDQKNYL RSKRKRDLAY GEADQFQFQE  180
TWDALLQRYK VEDNSWLKSI YKVKEKWAHC YMKKVYTIGM RSTQLSESFN SDLKDFMRSN  240
LDIIHFLKQF ELAVGGKRYK ELQAEYNARQ KLPRLKMIHS PLLKHAAQVY TPNAFDLFQN  300
EFDWSSAAYI ISRIENNQMS EYQVAIFDKD GEYTVSGNVK DMIISCSCGM FETMGGIFEI  360
TGFLCCHCLK VLNVWDVKQI PAQYIMKRWT REAREMIVHD SDGKVVQSDT RADATARYKN  420
ICFKAIKLAA RSSDFEVTSN FVEQVIEETY KKVDSFCRHN QNDNVSNILN AKEIVNSCSD  480
GDALERLLEN VKGLKKKEGR QGRKRLKSWV EKQSNKRMAS TNGVKLQHQI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Q3EMG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015934769.20.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8B4I71e-134B8B4I7_ORYSI; Uncharacterized protein
TrEMBLB9FSI21e-134B9FSI2_ORYSJ; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.13e-35FAR1-related sequence 1