PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.Q3EMG | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 530aa MW: 61608.4 Da PI: 9.1978 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.7 | 6e-21 | 11 | 100 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +f+++Y+ ++GF+vr+ + +k k ++++ + ++vC keg+r+++k++ + ++++raetrt+C+ ++ +k + +k+++ +lel+HnH l+ Aradu.Q3EMG 11 DFWKSYGGMMGFDVRQLYANKCKLDNSVSSFRLVCAKEGQRRPDKRD-HLTKQPRAETRTSCQVRMSLKFARdIKKYVICDLELNHNHILQ 100 69*******************************************99.99*******************99989**************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-15 | 11 | 99 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF04434 | 1.3E-6 | 322 | 373 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.334 | 333 | 376 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MEFDTVLEAK DFWKSYGGMM GFDVRQLYAN KCKLDNSVSS FRLVCAKEGQ RRPDKRDHLT 60 KQPRAETRTS CQVRMSLKFA RDIKKYVICD LELNHNHILQ ISETSHMMPS QRKISEVQAL 120 QIDLADEADI RPKETHELTN LQAGGKDVLG YTKQDQKNYL RSKRKRDLAY GEADQFQFQE 180 TWDALLQRYK VEDNSWLKSI YKVKEKWAHC YMKKVYTIGM RSTQLSESFN SDLKDFMRSN 240 LDIIHFLKQF ELAVGGKRYK ELQAEYNARQ KLPRLKMIHS PLLKHAAQVY TPNAFDLFQN 300 EFDWSSAAYI ISRIENNQMS EYQVAIFDKD GEYTVSGNVK DMIISCSCGM FETMGGIFEI 360 TGFLCCHCLK VLNVWDVKQI PAQYIMKRWT REAREMIVHD SDGKVVQSDT RADATARYKN 420 ICFKAIKLAA RSSDFEVTSN FVEQVIEETY KKVDSFCRHN QNDNVSNILN AKEIVNSCSD 480 GDALERLLEN VKGLKKKEGR QGRKRLKSWV EKQSNKRMAS TNGVKLQHQI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.Q3EMG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015934769.2 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | B8B4I7 | 1e-134 | B8B4I7_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9FSI2 | 1e-134 | B9FSI2_ORYSJ; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19990.1 | 3e-35 | FAR1-related sequence 1 |