PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.H56AH
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 825aa    MW: 90368.1 Da    PI: 6.6436
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.H56AHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07380399525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C ffa+ G+C +G++C+F H
  Aradu.H56AH 380 ICAFFAK-GWCIRGNSCSFLH 399
                  6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.04E-5376399IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-5380399IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831380402IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MSPPSVDQEN DGDDKGYASD SVSDADNDRI GVVLDKISCG CSSGLVCKQP EAEYALPSPG  60
RVSYMGLYVV VVLIINAVAC KVDCGWHSNY SCQQMESEVQ ERNLRPTYTM AENPIVMSSP  120
SMPSNEENHA ILKASSPSSE ELSFKKEDVH ATREISSHPK SVNDFASAKD GKSQVLDSSQ  180
QMKSEGLGGD LRPASTVAEN PVIKPSPSLC SKEENCVILK ACVVSAPSSD TLALKKEQVF  240
PTPKISNSCH PKSVKDLAPA DDGKNQVLDV DGANTGIVQL TYNVGGCNEP SNDSKADLGG  300
VKDMDSGATK LSSNIGKDIA IGLPQTDAFV GSANGSQNSL KRTVPLEVES KDDVKQIKSR  360
TIVPSSNTEM KDGNKHQGII CAFFAKGWCI RGNSCSFLHI KDSAKDTGQE TQGDLDKAKQ  420
KRELELEEGT RDNIKRTRTN DQEEISDWHP CQEKNKYQLR DILFPESRFT SKYFNTNLSS  480
YSNHAAGLSI AQNHHMYNGY TSAVLSRSPK LSFVTQKLLN SDKEYNASRS AFSGSEREEL  540
PSVGSSRIPI HSAAYISKIC SYDWEPSVPF RPSFFITSMN VSSLGDLYDP LRDSIEIPNI  600
GDGSLKASLL IHGSSIQASS QVLKYGDSAV VGKHMSDFND EKSSVSSHNR FGENQPNKNL  660
VPHEKDCHAT EMEITSGTCM NYPNGKIGMG KDVTKSEREW TEHDAKHHGE GSAHKKRVDR  720
DKKINDTDAD LQTDCSVQKD SKAMRHFRAA LVDLVKELLK PSWHEGRLSK DAHILIVKRS  780
VDKILSTLEP QQIPTTIDAT KQYVSLYRGK IAKMVNGYIN KFGKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.H56AH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020984623.10.0protein FRIGIDA-ESSENTIAL 1 isoform X3
TrEMBLA0A445EJH30.0A0A445EJH3_ARAHY; Uncharacterized protein
STRINGXP_004485808.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-45C3H family protein