PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.F5TUU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 28270.2 Da PI: 8.5662 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.3 | 6e-29 | 83 | 170 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Aradu.F5TUU 83 FYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 170 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-26 | 83 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MLEPLCMKYI VLRTILFSVE LGIDGSINGE TIAHATIGEV SSSFADEDKI ASCSFDPAYK 60 QDQDADEPYV GQEFDSEATA HAFYNAYATR VGFVIRVSKL SRSRRDGSAI GRALVCNKEG 120 YRMPDKREKI VRQRAETRVG CRAMILVRKV SSGKWVVTKF VKEHTHPLTP GKGRRDCIYE 180 QYPNEHDKIR ELSQQLAIEK KRCAAYKRQL ELLFEHIEEH NNSLSKKIQH IVGNVKEIEA 240 EEQQRHR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.F5TUU |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-112 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025613770.1 | 1e-164 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_025613771.1 | 1e-164 | protein FAR1-RELATED SEQUENCE 2 isoform X2 | ||||
TrEMBL | A0A444Y8K5 | 1e-162 | A0A444Y8K5_ARAHY; Uncharacterized protein | ||||
STRING | XP_007150433.1 | 1e-136 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-105 | FAR1 family protein |