PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.F48KW | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 557aa MW: 63039.8 Da PI: 4.3157 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.2 | 6.6e-53 | 24 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +pGfrFhPtdeelv++yLk+k+ gkkl+l +vi e+d+yk++P++Lp+ +++++++w+fF++rd+ky++g r+nrat++gyWkatgkd++v++ ++ Aradu.F48KW 24 MPGFRFHPTDEELVMYYLKRKICGKKLKL-DVILETDVYKWDPEELPEisVLRTGDRQWFFFTHRDRKYPNGARSNRATRQGYWKATGKDRNVTC-NS 119 69***************************.99**************94447788999**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kktLvfy+grap+ge+tdWvmhey++ Aradu.F48KW 120 RSVGVKKTLVFYRGRAPNGERTDWVMHEYTM 150 9****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-58 | 20 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.057 | 23 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 25 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
GFFGLSMGAE AGATECFSKA MASMPGFRFH PTDEELVMYY LKRKICGKKL KLDVILETDV 60 YKWDPEELPE ISVLRTGDRQ WFFFTHRDRK YPNGARSNRA TRQGYWKATG KDRNVTCNSR 120 SVGVKKTLVF YRGRAPNGER TDWVMHEYTM DEEELNRCQD IKDYFALYKL YKKSGPGPKN 180 GEQYGAPFKE EEWADDECVD FNINSADREE VNTVPVNDQL PPLADDEVTD MINQILDNEL 240 ALDQQFGDGL EFPQVVAEET QSTVVDQFSE AVTDPEYNDI YHSTSQHYDV QNVNFNQSVA 300 SHLHAPEGSE VISTANIQVE DYNFQEDDFL EINDLNGSEL TIPNMETPVE NLQFEDGLCE 360 LDLFQDAEMF LRDLGPINEE TIPHSYMNNA AGSNIENQNY HLLPNPEDAT QNVHEFWMHD 420 ERNTSSLFEG FDDSLSQQNP GAVSTEGYDN QSSIAEDVAT SRFSSALWSF VESIPTTPAS 480 AAENALVNRA LNRMSSFSRV KINIKPTNTA AGKDTATTKR VGRKGFSFLF FPIIIALCAF 540 LWVSLGTFRL LGRCIAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-49 | 25 | 150 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.F48KW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015942523.1 | 0.0 | NAC domain-containing protein 16 | ||||
TrEMBL | A0A445BD73 | 0.0 | A0A445BD73_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA10G36360.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 1e-133 | NAC domain containing protein 16 |