PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.CW391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 362aa MW: 40680.1 Da PI: 7.195 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.2 | 1.8e-07 | 213 | 234 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Aradu.CW391 213 FCQICGKGFKREANLRMHMRAH 234 6*******************99 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0014 | 299 | 322 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + Aradu.CW391 299 YVCKRCNnKNFSLLSDLRTHEKHC 322 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.88E-6 | 211 | 268 | No hit | No description |
SMART | SM00355 | 4.7E-4 | 212 | 234 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.3 | 212 | 239 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.4E-7 | 214 | 265 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 214 | 234 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 39 | 261 | 294 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 34 | 299 | 321 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MAAASSDEGG GGFPPMTQYS SSSSSSSSSS STMYHYLSVL NDKINELQSL VGVIASPNRH 60 HSSIPCSSYS MAISTMTSTI QDIILASSSF RLTFQQHINS YNNPSSSGTI IAPSCNNQQL 120 ELHPHHHHQS YDYNNSNIIR GGTSSVANHE PAQEEDEEDE ETLHWFSEPY NNNNSTVIYC 180 DDDNNNTKDE DGEEETDIIE LDAADLLASY THFCQICGKG FKREANLRMH MRAHGDEFKT 240 SEALKNNKNN KKMMITKKKK YSCPEDGCRW NKNHAKFQAL KSMVCVKNHY KRSHCPKMYV 300 CKRCNNKNFS LLSDLRTHEK HCGDPNKWLC SCGTTFSRKD KLFGHLALFL GHSPVHAATQ 360 RS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.CW391 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015951806.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A445E4U1 | 0.0 | A0A445E4U1_ARAHY; Uncharacterized protein | ||||
STRING | XP_007150139.1 | 1e-115 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8099 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 5e-82 | C2H2 family protein |