PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.CM60U

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 414aa MW: 47237 Da PI: 7.0209

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.CM60U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	115	147	4	36
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 +k +rr+++NReAAr+sR+RKka++++Le Aradu.CM60U 115 DKIQRRLAQNREAARKSRLRKKAYVQQLESSRL 147 689*************************97544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.5E-7	111	158	No hit	No description
SMART	SM00338	1.1E-6	112	172	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.898	114	158	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.14E-7	116	158	No hit	No description
Pfam	PF00170	1.3E-7	116	150	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.20E-21	116	168	No hit	No description
PROSITE pattern	PS00036	0	119	134	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-31	203	277	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MTHEYFLSAA SSFQQSYLSI TLSAVENEEA TEQFDIHSMN SPLTQFVSSR RMGVYDPIQQ 60 INMWGDSLKS NVNLSASIPL IDEADIKFDS QSEDASHGIL GTNIKYDQEA SKPIDKIQRR 120 LAQNREAARK SRLRKKAYVQ QLESSRLKLM QLEQELERAR QQGMYVAGGL DTNHLGFAGP 180 INSGITAFEM EYGHWVEKQN SQILELRNAL NSHIGDLELR ILVDDMMNHY TEIFRMKSAA 240 AKADVFYVMS GMWKTTAERF FLWIGGFRPS ELLKVLLPLI EPLTEQQRLD VCNLGQSCQQ 300 AEDALSQGME KLQQTLADSI AAGQLMAPPF FLIISWFPSS RIPEMKISDS DHFFVLKRYL 360 KLGKADHLRK ETLQQMSRIL TIRQAARCLL ALGEYFQRLR ALSSLWSNRP REPA

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MTHEYFLSAA SSFQQSYLSI TLSAVENEEA TEQFDIHSMN SPLTQFVSSR RMGVYDPIQQ  60
INMWGDSLKS NVNLSASIPL IDEADIKFDS QSEDASHGIL GTNIKYDQEA SKPIDKIQRR  120
LAQNREAARK SRLRKKAYVQ QLESSRLKLM QLEQELERAR QQGMYVAGGL DTNHLGFAGP  180
INSGITAFEM EYGHWVEKQN SQILELRNAL NSHIGDLELR ILVDDMMNHY TEIFRMKSAA  240
AKADVFYVMS GMWKTTAERF FLWIGGFRPS ELLKVLLPLI EPLTEQQRLD VCNLGQSCQQ  300
AEDALSQGME KLQQTLADSI AAGQLMAPPF FLIISWFPSS RIPEMKISDS DHFFVLKRYL  360
KLGKADHLRK ETLQQMSRIL TIRQAARCLL ALGEYFQRLR ALSSLWSNRP REPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.CM60U

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015944119.1	0.0	LOW QUALITY PROTEIN: transcription factor TGA1-like
Swissprot	Q39237	1e-168	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A444X1E8	0.0	A0A444X1E8_ARAHY; Uncharacterized protein
STRING	GLYMA18G02430.7	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-152	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]