PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.C56FC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 216aa MW: 25111.6 Da PI: 9.2472 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.2 | 4.4e-26 | 44 | 130 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGF vr+sk ++s+ +++++ r fvC+keg+r ++k++ + r+raetr+gCka+++v+k k+ w+vt + +eH H+la Aradu.C56FC 44 FYNAYATSVGFIVRVSKLSRSRIDNSTIGRIFVCNKEGYRMTDKRE--NVIRQRAETRVGCKAMIMVRKVKSVSWVVTCFIKEHAHPLA 130 9*****************************************9988..9999***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.8E-24 | 44 | 130 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MFLELTAGKV AANLESPRSR IYRNSPVEPY VGQEFESEAE AHVFYNAYAT SVGFIVRVSK 60 LSRSRIDNST IGRIFVCNKE GYRMTDKREN VIRQRAETRV GCKAMIMVRK VKSVSWVVTC 120 FIKEHAHPLA GPGGGRRDFI YEQYPGEWDR IRELNQQLTT EKKRSVTYKR HLEVEHIDVD 180 EYNESLLKKI QHIVYNVKEM ESKEEQSQLN FQSATL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.C56FC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015942787.1 | 1e-159 | protein FAR1-RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A445BPF8 | 1e-138 | A0A445BPF8_ARAHY; Uncharacterized protein | ||||
STRING | XP_007131945.1 | 3e-92 | (Phaseolus vulgaris) | ||||
STRING | XP_007150433.1 | 5e-92 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-82 | FAR1 family protein |