PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.AB7NH
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 291aa    MW: 32116.9 Da    PI: 8.8211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.AB7NHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
      Aradu.AB7NH 14 KGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding59.38.3e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
      Aradu.AB7NH  67 RGNFTDEEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.02961IPR017930Myb domain
SMARTSM007172.8E-141363IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-2913108IPR009057Homeodomain-like
PfamPF002494.8E-161461IPR001005SANT/Myb domain
CDDcd001678.95E-121661No hitNo description
PROSITE profilePS5129429.00862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2865116IPR009057Homeodomain-like
SMARTSM007176.1E-1866114IPR001005SANT/Myb domain
PfamPF002495.6E-1767111IPR001005SANT/Myb domain
CDDcd001672.60E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLINYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDEEDELIIN LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLYSRG  120
IDPQTHQPLN AAPAPSTKTI TPPPPTTTVP PTATNNNDNS INFRLFGVAC AKNNNTDGTD  180
YYSSGGGDED SNSSSGVTTE LEAYPKLNLD LSLGLPSPLS SIIHTQNPKR HRQQLQAAYS  240
FCMCQTLGFQ KSNNQPCACK AKPGAATGSA GAASNNSSND NNVYNRFQFT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.AB7NH
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015955773.10.0transcription repressor MYB6
SwissprotQ388515e-90MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A445DT030.0A0A445DT03_ARAHY; Uncharacterized protein
STRINGXP_007137818.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-85myb domain protein 4