PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.A7K6D | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29302.2 Da PI: 10.9463 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.3e-14 | 70 | 115 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g WT++ d l +v++ + W+ Ia+ +g gR +kqc++rw+++l Aradu.A7K6D 70 GQWTPDQDMTLEALVNENKLKKWSQIAKLLG-GRNGKQCRERWHNHL 115 79*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.8e-17 | 121 | 166 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT Ed +l++a+k+ Gg+ W+ I+++++ gRt++++k+rw++ Aradu.A7K6D 121 KGPWTWKEDMILIKAHKEAGGNKWAEISKRLP-GRTDNSIKNRWNTI 166 79******************************.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.19E-9 | 61 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.409 | 64 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-12 | 68 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-13 | 70 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-24 | 70 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.05E-11 | 72 | 115 | No hit | No description |
SuperFamily | SSF46689 | 5.72E-28 | 95 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.27 | 116 | 171 | IPR017930 | Myb domain |
SMART | SM00717 | 9.3E-16 | 120 | 169 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 121 | 166 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-23 | 123 | 168 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.04E-13 | 123 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MNVANGDRVV IWDFSNKTVT TTTTTHHAAP LLVTEKDPRA NANARPRRRN HIRSQRANAN 60 APPTGNHIHG QWTPDQDMTL EALVNENKLK KWSQIAKLLG GRNGKQCRER WHNHLQPNLK 120 KGPWTWKEDM ILIKAHKEAG GNKWAEISKR LPGRTDNSIK NRWNTIKRSR PTKKYKFIKP 180 NNNNNFDGSK MLKAYIDAVA AAQAEVATLS KSKSKNDSNK NKGKARVKID LNSIPLEFPN 240 DDVINIHGSD VGGEYGNWV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-32 | 68 | 172 | 6 | 110 | B-MYB |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.A7K6D |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015966270.1 | 0.0 | transcription factor MYB118-like | ||||
Swissprot | Q9LVW4 | 6e-40 | MY118_ARATH; Transcription factor MYB118 | ||||
TrEMBL | A0A444YZ43 | 1e-161 | A0A444YZ43_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G08761.1 | 1e-44 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14336 | 10 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 1e-41 | myb domain protein 118 |
Publications ? help Back to Top | |||
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