PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.9YL2F | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 294aa MW: 35734.1 Da PI: 6.3665 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 78.4 | 1.1e-24 | 45 | 127 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k+lW+ +s++m+e+g++rs++qCk+kw+nl +ryk ++++e + ++++p++++++ Aradu.9YL2F 45 QWSIQETKEFLMIRAELDQTFMETKRNKQLWQVISNNMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEPEA---MRQQFPFYNEIQ 127 7********************************************************************95...55689****997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 5.23E-22 | 44 | 109 | No hit | No description |
Pfam | PF13837 | 1.4E-20 | 45 | 129 | No hit | No description |
PROSITE profile | PS50090 | 7.317 | 46 | 102 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MEGHHQHHQQ PQQHLLQQIL LPHHQQQNMI INVDGGGGIS DRFPQWSIQE TKEFLMIRAE 60 LDQTFMETKR NKQLWQVISN NMKEKGYHRS AEQCKCKWKN LVTRYKGCET MEPEAMRQQF 120 PFYNEIQAIF TSRSMQRMLW GEGEGTSKKN KPMQFSSEEE EEEDNDEESE EHQKGSTRMR 180 RKKKKAKISS GNNKNSGDFL NNLKEILEEF MRQQMQMEAQ WMEAFESREK ERRMKEMEWR 240 QTMEALENER IMMDQRWRER EEQWRVREEV RAQNRDELIT TLLHKLQQQS EDDF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 179 | 184 | RRKKKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00481 | DAP | Transfer from AT5G01380 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.9YL2F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 7e-50 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015950406.1 | 0.0 | trihelix transcription factor GT-3b | ||||
Swissprot | Q9SDW0 | 5e-69 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A445EAR2 | 0.0 | A0A445EAR2_ARAHY; Uncharacterized protein | ||||
STRING | XP_007140273.1 | 1e-113 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G01380.1 | 7e-59 | Trihelix family protein |