PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.898CQ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 415aa MW: 47891.9 Da PI: 8.6744 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.5e-06 | 70 | 91 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +L +H+++H Aradu.898CQ 70 TCQQCGASFKKPAYLLQHMQSH 91 6*******************99 PP | |||||||
2 | zf-C2H2 | 16.8 | 1.9e-05 | 135 | 159 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C dC s++rk++L+rH+ H Aradu.898CQ 135 YVCMvdDCQASYRRKDHLNRHLLQH 159 899999***************9887 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0015 | 164 | 189 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+ Fs k n+ rH + H Aradu.898CQ 164 FKCPmeNCNLIFSIKGNMARHVKEiH 189 89********************9988 PP | |||||||
4 | zf-C2H2 | 19.6 | 2.5e-06 | 203 | 227 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F+ s L++H +H Aradu.898CQ 203 FVCPetGCGKVFKFASKLRKHADSH 227 89*******************9888 PP | |||||||
5 | zf-C2H2 | 14.5 | 0.0001 | 307 | 332 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ C+ Fs+ksnL++H + H Aradu.898CQ 307 FKCEfkGCSCKFSSKSNLVTHKKAvH 332 89*******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 27 | 24 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.011 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.009 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.29E-8 | 70 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 70 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.29E-8 | 130 | 159 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-10 | 130 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.723 | 135 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0036 | 135 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 137 | 159 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.08E-6 | 162 | 190 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 162 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0086 | 164 | 189 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.162 | 164 | 194 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 166 | 189 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.59E-5 | 197 | 227 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.3E-9 | 201 | 229 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0047 | 203 | 227 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 203 | 227 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 205 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.3 | 249 | 274 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 251 | 274 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 26 | 277 | 298 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-6 | 288 | 329 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.43E-9 | 288 | 344 | No hit | No description |
SMART | SM00355 | 0.003 | 307 | 332 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.256 | 307 | 337 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 309 | 332 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 331 | 361 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 7.1 | 338 | 364 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 340 | 364 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MPEMQMDEPM ESGERPVFKD IRRYFCEYCG ICRSKKILIT SHINSQHKDE LEKARAEGNN 60 EAHCEKPNNT CQQCGASFKK PAYLLQHMQS HSLEYTGKIF YSIIGLDGLV SGRETSCEAP 120 SRMPQSRFIQ DERPYVCMVD DCQASYRRKD HLNRHLLQHE GKTFKCPMEN CNLIFSIKGN 180 MARHVKEIHD EGSTSTNVES KQFVCPETGC GKVFKFASKL RKHADSHGKF SSNLIFFVNN 240 QIKLQSVDVV CLEPGCMKHF TNNQCLKEHI ESCHQYVTCD TCGSRQLKKN IKRHLRTHEA 300 DKSLAEFKCE FKGCSCKFSS KSNLVTHKKA VHFKEKPFVC GFPDCGLRFA YKHVRDKHEK 360 TGKHVFTHGD FEEADEQFRS RPRGGRKRVC PTVEMLVRKR VTPPSQLENL LFMQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-12 | 121 | 361 | 8 | 183 | Aart |
2i13_B | 1e-12 | 121 | 361 | 8 | 183 | Aart |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.898CQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015957075.1 | 0.0 | transcription factor IIIA isoform X1 | ||||
Refseq | XP_025687934.1 | 0.0 | transcription factor IIIA isoform X1 | ||||
Swissprot | Q84MZ4 | 1e-131 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A445EWZ4 | 0.0 | A0A445EWZ4_ARAHY; Uncharacterized protein | ||||
STRING | XP_004498336.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-123 | transcription factor IIIA |