PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.58TLG | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 190aa MW: 21265.4 Da PI: 7.5801 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.3 | 6.4e-14 | 123 | 178 | 42 | 96 |
TS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 42 sgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++sW+++++ k+ ++++ +GWk+F+ +n+L++gD +vF+l+++se++lv++v Aradu.58TLG 123 GSKSWDIQYCGlGKSYNKFFNHRGWKKFAVDNHLEVGDACVFELKESSEEKLVFQV 178 469******886777788**************************988999898876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-13 | 84 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.4E-4 | 88 | 184 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-12 | 119 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.0E-12 | 123 | 178 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.983 | 124 | 184 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.56E-12 | 125 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MRRSARYLTL NLFWHVDPSP APVIFNFHFV SCLDLQHKMS TSNSKVNFIA SSSGVVIENI 60 APLKTVSGPT TNLPGDEDIQ PLSGCPFYHV IISKSHIYPA FSMPVSNELA LPSAVVPAIL 120 KYGSKSWDIQ YCGLGKSYNK FFNHRGWKKF AVDNHLEVGD ACVFELKESS EEKLVFQVQI 180 LRGDLPETFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.58TLG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015960099.1 | 1e-109 | B3 domain-containing protein Os06g0112300-like | ||||
Refseq | XP_025694982.1 | 1e-109 | B3 domain-containing protein Os06g0112300 | ||||
Refseq | XP_025694983.1 | 1e-109 | B3 domain-containing protein Os06g0112300 | ||||
Swissprot | Q9LHY9 | 2e-22 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | A0A445DHD6 | 1e-108 | A0A445DHD6_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-07 | B3 family protein |
Publications ? help Back to Top | |||
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