PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.05MVI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Trihelix | ||||||||
Protein Properties | Length: 287aa MW: 33734 Da PI: 8.4575 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 80.5 | 2.4e-25 | 36 | 118 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k+lWe +s+ m+e+g++rs++qCk+kw+nl +ryk ++++e + ++++p++++l+ Aradu.05MVI 36 QWSIQETKEFLMIRAELDQTFMETKRNKQLWEVISNTMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEAEA---MRQQFPFYNELQ 118 7********************************************************************95...56689*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 3.18E-22 | 35 | 100 | No hit | No description |
Pfam | PF13837 | 4.6E-21 | 36 | 120 | No hit | No description |
PROSITE profile | PS50090 | 7.259 | 37 | 93 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
YPPPQRHNIS AATTTSAGTN NNVVVVDVTG DSRFPQWSIQ ETKEFLMIRA ELDQTFMETK 60 RNKQLWEVIS NTMKEKGYHR SAEQCKCKWK NLVTRYKGCE TMEAEAMRQQ FPFYNELQAI 120 FTDRMQRMLW AETEGGGGGG GSSNNKKKAA TAQLSSDDEE EEESELGDPQ QKNVKRKKRL 180 KKVKRVEDSG GASNLKHLKG ILEEFMRQQM EMEAQWMSVF EARENDRRLK ELEWRQTMEA 240 LENQRMMMEQ RWRESEEQWR IREEARAHKR DALITALLNK LSRQQDQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 180 | KRKKRLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.05MVI |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-57 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015960961.1 | 0.0 | trihelix transcription factor GT-3b | ||||
Refseq | XP_025695575.1 | 0.0 | trihelix transcription factor GT-3b | ||||
Swissprot | O80450 | 7e-68 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A445DFG3 | 0.0 | A0A445DFG3_ARAHY; Uncharacterized protein | ||||
STRING | XP_007140273.1 | 1e-114 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 1e-61 | Trihelix family protein |
Publications ? help Back to Top | |||
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