PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco030791.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | WRKY | ||||||||
Protein Properties | Length: 605aa MW: 64257.2 Da PI: 6.3471 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.1e-30 | 264 | 321 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkg e+prsYY+Ct+++Cp+kk++ers+ d++++e++Y +eH+h+k Aco030791.1 264 EDGYNWRKYGQKHVKGCENPRSYYKCTHPNCPAKKHIERSN-DGQITETIYISEHDHPK 321 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.8 | 1.1e-33 | 424 | 482 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct++gCpv+k+ver+++dp++v++tYeg+Hnh+ Aco030791.1 424 LDDGYRWRKYGQKVVRGNPNPRSYYKCTFNGCPVRKHVERASHDPRAVITTYEGKHNHD 482 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.606 | 258 | 322 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-27 | 259 | 322 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-24 | 262 | 322 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-35 | 263 | 321 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-24 | 264 | 320 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-37 | 409 | 484 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-29 | 416 | 484 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.343 | 419 | 484 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-39 | 424 | 483 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-26 | 425 | 482 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 605 aa Download sequence Send to blast |
MEESTDAGDL AGGGRAPLPE PRSGGLGAGS GVGGGRARDG RSPPLAGDIA GGGGPPAPEP 60 RSRGLGAGSG GGAPERRGPP LAGARYRSMS PAQLPIPRAP CLTIPPGLSP SALLESPVEP 120 SPTTGTLTMP YIMNRTVQAD ALSSSRETSI NSAYNNGSSG DFEFKPHARS YLHTSVPTLR 180 ASGSANANLQ EHEPFVQTQI QANNPYNHAV TAHNEAFTTQ ESTLSIISRT SPTQPVECSE 240 ENITELRSDP GGPNPSSVVE KSAEDGYNWR KYGQKHVKGC ENPRSYYKCT HPNCPAKKHI 300 ERSNDGQITE TIYISEHDHP KPQPNRRSAV GALLSSQGVD KPDCLLSAEV NPIGTTELSS 360 GSASEDDVDG GGGRSNTGDE IAADGDLEAK RRKLDAPNFD ATAINRPNRE PRVVVQTISE 420 VDILDDGYRW RKYGQKVVRG NPNPRSYYKC TFNGCPVRKH VERASHDPRA VITTYEGKHN 480 HDVPASRTNG HGVSASMTTT SVQNPTNNQF TQPEESDTIS LDLGVGFSPN HNSPADEAQS 540 LGIDQTPHHQ MPSDSSIHAS QVSALYRSGS IYGYIEDKNE GFTFKTAPVS HSSNLYSGNS 600 VLDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-36 | 264 | 485 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-36 | 264 | 485 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020080855.1 | 0.0 | WRKY transcription factor SUSIBA2-like isoform X3 | ||||
Refseq | XP_020104647.1 | 0.0 | WRKY transcription factor SUSIBA2-like isoform X1 | ||||
Swissprot | Q6VWJ6 | 1e-162 | WRK46_HORVU; WRKY transcription factor SUSIBA2 | ||||
TrEMBL | A0A199USC7 | 0.0 | A0A199USC7_ANACO; WRKY transcription factor SUSIBA2 | ||||
STRING | XP_008800638.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6740 | 38 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-120 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco030791.1 |